Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY19713 | Canola | cytosol | 35.85 | 98.36 |
| CDY19712 | Canola | cytosol, nucleus, peroxisome | 52.76 | 91.86 |
| Bra009973.1-P | Field mustard | cytosol | 58.63 | 56.27 |
| Bra023207.1-P | Field mustard | cytosol | 12.59 | 22.78 |
| Bra008624.1-P | Field mustard | cytosol | 11.75 | 21.73 |
| GSMUA_Achr9P09220_001 | Banana | nucleus | 9.71 | 20.45 |
| Bra020704.1-P | Field mustard | cytosol | 12.59 | 20.23 |
| Bra037489.1-P | Field mustard | cytosol | 12.83 | 19.56 |
| Bra036176.1-P | Field mustard | cytosol | 12.11 | 19.42 |
| GSMUA_Achr6P24860_001 | Banana | nucleus | 11.27 | 19.38 |
| Bra023825.1-P | Field mustard | cytosol, nucleus, plastid | 11.75 | 18.35 |
| Bra035723.1-P | Field mustard | plastid | 7.79 | 17.76 |
| TraesCS4D01G265900.1 | Wheat | nucleus | 10.43 | 17.47 |
| VIT_14s0030g00690.t01 | Wine grape | extracellular, golgi | 9.11 | 17.39 |
| TraesCS4B01G266000.1 | Wheat | cytosol, nucleus, plasma membrane | 10.19 | 17.07 |
| TraesCS4A01G039500.1 | Wheat | cytosol, nucleus, plasma membrane, plastid | 10.31 | 16.8 |
| HORVU4Hr1G071420.1 | Barley | cytosol, plastid | 9.95 | 16.7 |
| Os03t0193225-01 | Rice | plasma membrane | 9.95 | 16.15 |
| Zm00001d028173_P002 | Maize | plastid | 9.59 | 15.62 |
| Bra029192.1-P | Field mustard | nucleus, plastid | 10.79 | 15.33 |
| EER92706 | Sorghum | plastid | 9.11 | 14.81 |
| Bra037488.1-P | Field mustard | cytosol | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:Bra036105.1 | EnsemblPlants:Bra036105.1-P | EnsemblPlantsGene:Bra036105 | GO:GO:0000003 | GO:GO:0007275 | GO:GO:0008150 |
| GO:GO:0009791 | GO:GO:0009908 | GO:GO:0009987 | GO:GO:0030154 | InterPro:Frigida | ncoils:Coil |
| PANTHER:PTHR31791 | PANTHER:PTHR31791:SF16 | PFAM:PF07899 | SEG:seg | UniParc:UPI0002541FA4 | UniProt:M4F4V1 |
| MapMan:35.1 | : | : | : | : | : |
Description
AT5G27230 (E=5e-123) | INVOLVED IN: biological_process unknown; EXPRESSED IN: seed; EXPRESSED DURING: E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Frigida-like (InterPro:IPR012474); BEST Arabidopsis thaliana protein match is: hydroxyproline-rich glycoprotein family protein (TAIR:AT3G22440.1); Has 7968 Blast hits to 5791 proteins in 512 species: Archae - 158; Bacteria - 808; Metazoa - 2750; Fungi - 421; Plants - 1028; Viruses - 76; Other Eukaryotes - 2727 (source: NCBI BLink).
Coordinates
chrA09:+:2684525..2687750
Molecular Weight (calculated)
94404.6 Da
IEP (calculated)
7.036
GRAVY (calculated)
-0.486
Length
834 amino acids
Sequence
(BLAST)
(BLAST)
001: MEKARSSLAL VDLSKHNFHR TLDSLQESAH SLLLLSVQWK EIEGHFDSTK GLLEDRAKEL QAREESLNGR AMELEDKEKE LSSVHDSFKA KVDEFEKMEV
101: RFHSECKEAL ETRKAEFEGF TKRIESMEKE LEQQRDLRHE FEPLVSMLGK DKGCSSVATS VDDLVKRNQA LARMIPCLDP AKLVLDAIQA SLKDFNDSVV
201: LKSCTVLLEK LMEMNLPITW EVNQEATQIG INWISMAKAN TNNDSLVLCC LLFLAAYGLA SVTTREVLLT LLERFLLYDQ APRLFRLLEL EHSVYGVVET
301: LKNKEEYLAV LRFICEFRLY KLCPRGRPGA LLHAYLISSE RAARVPFGTK ARKEKIKADA TMALECIQER KAEHMFPPKI LNKLSLLKNG ESAAKRAMEP
401: VHKSSENQDT TKRQRLTEPT TPTQNSTGEK IDESGVNHQP DGKETHPPST EAKPNNLCGS INADMLREVL EKKPLESDLS NAFRCTSNPA KLVLDTSMSL
501: CPTNLEGSSY QFKLLITSDS CNLLLDQLKK LPVQIGHPVK GDAKKLAVYW REMITKSKSD ELEVVCFLKF LGIYGIVSEF KTTDLLNLLD NSYWHTACPD
601: LCQFLGLDNA ITGFIQDLIK TGHRLKAVNY IYSFGMLHKF HPVSAIINDS LRITKESAEK AFRDAENEPA SQVAAIDRQI RSLRAGIKCI TCHKLESEFQ
701: LDDLEERIKS LLKLRRNVSD TAEPPSLGEV GSVSSNNTRL EHSTTAAVSS SASKPGSRGQ KRSQSSVHVA SHTSNHFPEH GSSLNQRLTW PVDHYGRGFN
801: SDYNHNQWTQ PEGPPQYQYH QYYQQYDPYH RNHF
101: RFHSECKEAL ETRKAEFEGF TKRIESMEKE LEQQRDLRHE FEPLVSMLGK DKGCSSVATS VDDLVKRNQA LARMIPCLDP AKLVLDAIQA SLKDFNDSVV
201: LKSCTVLLEK LMEMNLPITW EVNQEATQIG INWISMAKAN TNNDSLVLCC LLFLAAYGLA SVTTREVLLT LLERFLLYDQ APRLFRLLEL EHSVYGVVET
301: LKNKEEYLAV LRFICEFRLY KLCPRGRPGA LLHAYLISSE RAARVPFGTK ARKEKIKADA TMALECIQER KAEHMFPPKI LNKLSLLKNG ESAAKRAMEP
401: VHKSSENQDT TKRQRLTEPT TPTQNSTGEK IDESGVNHQP DGKETHPPST EAKPNNLCGS INADMLREVL EKKPLESDLS NAFRCTSNPA KLVLDTSMSL
501: CPTNLEGSSY QFKLLITSDS CNLLLDQLKK LPVQIGHPVK GDAKKLAVYW REMITKSKSD ELEVVCFLKF LGIYGIVSEF KTTDLLNLLD NSYWHTACPD
601: LCQFLGLDNA ITGFIQDLIK TGHRLKAVNY IYSFGMLHKF HPVSAIINDS LRITKESAEK AFRDAENEPA SQVAAIDRQI RSLRAGIKCI TCHKLESEFQ
701: LDDLEERIKS LLKLRRNVSD TAEPPSLGEV GSVSSNNTRL EHSTTAAVSS SASKPGSRGQ KRSQSSVHVA SHTSNHFPEH GSSLNQRLTW PVDHYGRGFN
801: SDYNHNQWTQ PEGPPQYQYH QYYQQYDPYH RNHF
001: MEKVTSGLEL VDISKRNFRK TLESLQEGAH SLLLLTIQWK EIESYFDSTR SVLEERAKEL EALEESIKVK ALELEKKEKE LCLIDESMKA KQSEFEKKEK
101: DFDLEQKAEV EKRKREVEQL EKFTTRMESV ERVSDEKLME LGLRATELEL KMEEVEKHRE RIVAGDKLRG EFEPLVSLLA KNMGLSVTMP VKCSTLYLNE
201: NADEMVKKNT ALARMVPYLD PAKVVLDAIE GSFKEYWKKD LGEADDRVVN SWIVLLENLI KMNLKITPQV KQEATPLGIA WLGKAKANMK NDPPQVFGCA
301: LFLAAYGLGS LTTHGVLLTL VERFLLYDHA PKLFRLLGLE EKVSGAVETL KKKEEYLATL KFICEFRLYK LCPGGRPGEL LIEFFDSSDK AARVIAGTGT
401: SMEAQKARRE KKKADAAMAI KYIKEAKAET MFPAKILKRL AVVKNDESAQ RAMEPVQKSY EKRQSTTKGV EKSEAKSSIP YEQKHVIKRP RLTEPTAPSQ
501: NLTVKQPEVV CVPTGKQVKE SGADHQPDTI ATHPSGTETK LNILSGSIKA DMLRELVEKQ PLKESEDLSN ALKCTPDPAK LFLDTSMALC PTNTEGGYEF
601: KMLITSASCS LLLNQLKKLL PKIGHPVKGD AKKLAVYWKD KIAKSKRDQL EVICFLQFLG IFGIVSEFKA DDLLGLLDNS YWQTVSPDLC QFLGLDDAIP
701: GFIQNLIKTG HRIKAIDYIY SFGMVHRFQP VSAIINDSLR ITKESAEKSY REAKNESTTQ VAAIDRQVRA LRAAIKCISC HKLESEFQLG DLEEQIKSLL
801: KLRRNTSNGS GSGSASSKPD STIKQSQTAK PPTVAEVAPV TSNIPLEPST EAASSSASKP FSKKNKRGKK RSMSGNNQSS GHIASHTSNH YPSHDYSLNQ
901: RLTWPVDNYD RGFTGFPNPD YNNNQWGQPE GPQFYHLYQP LDPRYRNY
101: DFDLEQKAEV EKRKREVEQL EKFTTRMESV ERVSDEKLME LGLRATELEL KMEEVEKHRE RIVAGDKLRG EFEPLVSLLA KNMGLSVTMP VKCSTLYLNE
201: NADEMVKKNT ALARMVPYLD PAKVVLDAIE GSFKEYWKKD LGEADDRVVN SWIVLLENLI KMNLKITPQV KQEATPLGIA WLGKAKANMK NDPPQVFGCA
301: LFLAAYGLGS LTTHGVLLTL VERFLLYDHA PKLFRLLGLE EKVSGAVETL KKKEEYLATL KFICEFRLYK LCPGGRPGEL LIEFFDSSDK AARVIAGTGT
401: SMEAQKARRE KKKADAAMAI KYIKEAKAET MFPAKILKRL AVVKNDESAQ RAMEPVQKSY EKRQSTTKGV EKSEAKSSIP YEQKHVIKRP RLTEPTAPSQ
501: NLTVKQPEVV CVPTGKQVKE SGADHQPDTI ATHPSGTETK LNILSGSIKA DMLRELVEKQ PLKESEDLSN ALKCTPDPAK LFLDTSMALC PTNTEGGYEF
601: KMLITSASCS LLLNQLKKLL PKIGHPVKGD AKKLAVYWKD KIAKSKRDQL EVICFLQFLG IFGIVSEFKA DDLLGLLDNS YWQTVSPDLC QFLGLDDAIP
701: GFIQNLIKTG HRIKAIDYIY SFGMVHRFQP VSAIINDSLR ITKESAEKSY REAKNESTTQ VAAIDRQVRA LRAAIKCISC HKLESEFQLG DLEEQIKSLL
801: KLRRNTSNGS GSGSASSKPD STIKQSQTAK PPTVAEVAPV TSNIPLEPST EAASSSASKP FSKKNKRGKK RSMSGNNQSS GHIASHTSNH YPSHDYSLNQ
901: RLTWPVDNYD RGFTGFPNPD YNNNQWGQPE GPQFYHLYQP LDPRYRNY
Arabidopsis Description
FRL5FRIGIDA-like protein 5 [Source:UniProtKB/Swiss-Prot;Acc:Q5XV31]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.