Factsheet for TraesCS4B01G266000.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, nucleus, cytosol

Predictor Summary:

cytosol 1
mitochondrion 1
plasma membrane 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plasma membrane
Any Predictor:	cytosol, nucleus, plasma membrane
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G265900.1	Wheat	nucleus	96.18	96.18
HORVU4Hr1G071420.1	Barley	cytosol, plastid	90.36	90.54
TraesCS4A01G039500.1	Wheat	cytosol, nucleus, plasma membrane, plastid	91.97	89.45
Os03t0193225-01	Rice	plasma membrane	67.67	65.56
Zm00001d028173_P002	Maize	plastid	65.06	63.28
EER92706	Sorghum	plastid	65.06	63.16
GSMUA_Achr9P09220_001	Banana	nucleus	21.49	27.02
GSMUA_Achr6P24860_001	Banana	nucleus	24.1	24.74
CDY19713	Canola	cytosol	12.85	21.05
KRH73863	Soybean	nucleus	21.89	21.0
CDX99994	Canola	peroxisome	13.65	20.36
TraesCS5B01G437500.2	Wheat	cytosol	21.49	19.28
KRG98570	Soybean	cytosol, nucleus, plastid	20.68	18.76
KRH46301	Soybean	cytosol	20.08	18.32
VIT_14s0030g00690.t01	Wine grape	extracellular, golgi	15.46	17.62
TraesCS5B01G164900.2	Wheat	cytosol	19.48	17.51
CDX99996	Canola	extracellular	5.62	17.39
TraesCS1B01G432600.1	Wheat	nucleus	21.49	16.93
TraesCS5B01G543400.1	Wheat	plastid	13.86	13.24
TraesCS3B01G136400.1	Wheat	cytosol, nucleus, plastid	15.66	11.85
Bra009973.1-P	Field mustard	cytosol	19.08	10.93
CDX86173	Canola	cytosol	18.67	10.76
Bra036105.1-P	Field mustard	nucleus	17.07	10.19
AT5G27230.1	Thale cress	nucleus	19.28	10.13
CDX80668	Canola	cytosol, mitochondrion, plasma membrane	17.47	9.75
PGSC0003DMT400036725	Potato	nucleus	3.82	6.99
CDX99995	Canola	cytosol, nucleus, peroxisome	2.41	2.51
CDY19712	Canola	cytosol, nucleus, peroxisome	2.21	2.3

Protein Annotations

EnsemblPlants:TraesCS4B01G266000.1	EnsemblPlantsGene:TraesCS4B01G266000	InterPro:Frigida	PANTHER:PTHR31791	PANTHER:PTHR31791:SF5	PFAM:PF07899
SEG:seg	MapMan:35.1	:	:	:	:

Description

No Description!

Coordinates

chr4B:+:537474959..537479867

Molecular Weight (calculated)

53397.8 Da

IEP (calculated)

8.184

GRAVY (calculated)

-0.170

Length

498 amino acids

Sequence
(BLAST)

001: MAAEREPNPS VLDAVASLQT YSTALSAFTS AWRTLYSDAT TIDSTLASCL EGFSQLELLC SGMDGPGLRA YLAEHRDEFR DPVRSLDAAL LVAPDPGLLV
101: LAAAAGFCRS PPTNGKADGE SKVSCRLLID LLDRIRALGV KPSPEAREEA KAVAADWKRS KRIEEQSLFK NETIAFLLLV GVFGLVEDVG GAVQVLDLVV
201: SISSRERAVE IFLGLGLDLD KHLPVLTQAM INKGKQLDAV KFIQALNLVH KYPLLPILRS YVNDAKNAGN MIRIRGDGPA SQDAGDAKER TLLGALQKFI
301: KEHKLEELPI LEEANNRMTQ LDLQSAERKR AANAAAAAAR EVSKNILDSR KRPQLPESAV QGSLGQNACP VGTSSQELML RQSLPTAGVA NKYQAVSSHN
401: IVPATAHNPL LSAGNQRPLG IQNQTLAALS VQTQYSGGVA DFYNLASIRP GGLSVPGASA SSRSKLYSED PLAYVSRASD KKGSSYSYSL SNMSKYNP

Best Arabidopsis Sequence Match ( AT5G48385.1 )
(BLAST)

001: MEDTRSVASL MDSTSSKIQQ LQKAFAELES QRAVTLNLKW KELEEHFHGL ERSLKRRFHE LEDQEKEYET KTRKAQELLE KKKAAVEAKE KAALERLQKK
101: RDAAMFTINS ALDKYNNAPV SKPSVGERWP QNAVEDSSNV FAADSITDDN PDGIVQDVQI SPVMGNYEVK AYPQLLKLCG DMDSTGLHKF VSDNRKNLAS
201: LKEEIPMAFR AAANPASLVL DSLEGFYPME APTADGKKDA NLLGMRRTCI MLMECLSILL SGLDRNCLAV VLSQNVKHRA KTIAEGWNPL LESLDMDACN
301: GNSLEAHAFL QLLATFAIVA DFKEDELLKL IPMVSRRRQA AELCRSLGLA EKMPGVIEVL VNSGKQIDAV NLAFAFELTE QFSPVSLLKS YLIEARRSSP
401: QGRPGNASPA VQDEFNEREL IGLKTVIKCI EEHSLEEQYP VEPLHKRILQ LEKAKADKKR ATEPMKPQPK RPRGAQPRVT DNNNNINNNK TGYGRVIPER
501: YPQYVYDNRP FLSGPIMAAQ PPPPPPPQTY TFNPAPAHGN FYANCYQYQA PPPPPYFH

Arabidopsis Description

FRL3FRIGIDA-like protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q67ZB3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.