CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

nucleus 2
peroxisome 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	peroxisome
Any Predictor:	nucleus, peroxisome
BaCelLo:	nucleus
MultiLoc:	peroxisome
PProwler:	mitochondrion
WoLF PSORT:	peroxisome
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY19713	Canola	cytosol	87.43	96.05
CDX99996	Canola	extracellular	36.83	76.4
CDX86173	Canola	cytosol	62.28	24.07
CDX80668	Canola	cytosol, mitochondrion, plasma membrane	63.77	23.88
CDY00062	Canola	cytosol, mitochondrion, nucleus, plastid	12.28	19.25
GSMUA_Achr9P09220_001	Banana	nucleus	21.56	18.18
VIT_14s0030g00690.t01	Wine grape	extracellular, golgi	23.35	17.85
CDY67200	Canola	cytosol, nucleus	7.19	17.14
CDY12290	Canola	cytosol	22.46	16.85
CDY55572	Canola	nucleus	17.96	16.76
CDY67951	Canola	cytosol	22.46	16.27
CDX69452	Canola	cytosol	19.16	14.19
TraesCS4D01G265900.1	Wheat	nucleus	20.66	13.86
GSMUA_Achr6P24860_001	Banana	nucleus	20.06	13.81
CDY48750	Canola	cytosol	21.56	13.66
TraesCS4B01G266000.1	Wheat	cytosol, nucleus, plasma membrane	20.36	13.65
CDY34252	Canola	cytosol, nucleus, plastid	21.26	13.6
CDY05684	Canola	cytosol	20.66	13.35
CDY46317	Canola	cytosol, nucleus, plastid	20.96	13.33
TraesCS4A01G039500.1	Wheat	cytosol, nucleus, plasma membrane, plastid	20.36	13.28
HORVU4Hr1G071420.1	Barley	cytosol, plastid	19.76	13.28
CDY00066	Canola	cytosol	20.66	12.92
Os03t0193225-01	Rice	plasma membrane	18.86	12.26
Zm00001d028173_P002	Maize	plastid	18.56	12.11
CDY32645	Canola	nucleus	20.96	12.01
CDY05835	Canola	cytosol, nucleus, plastid	12.28	11.42
EER92706	Sorghum	plastid	17.37	11.31
CDY38847	Canola	nucleus, plastid	19.76	11.07
CDY38318	Canola	nucleus	17.37	10.92
CDX71688	Canola	nucleus	18.56	10.6
CDX86307	Canola	nucleus	20.36	4.55
CDX85335	Canola	cytosol, endoplasmic reticulum, mitochondrion, plasma membrane	20.66	4.27
CDY19712	Canola	cytosol, nucleus, peroxisome	1.2	0.84
CDX99995	Canola	cytosol, nucleus, peroxisome	1.2	0.84

Protein Annotations

EnsemblPlants:CDX99994	EnsemblPlantsGene:GSBRNA2T00109466001	InterPro:Frigida	ncoils:Coil	PANTHER:PTHR31791	PANTHER:PTHR31791:SF16
PFAM:PF07899	ProteinID:CDX99994	ProteinID:CDX99994.1	SEG:seg	UniParc:UPI0004EE9CF5	MapMan:35.1

Description

BnaC09g03070D

Coordinates

chrLK031916:-:152467..153822

Molecular Weight (calculated)

37896.8 Da

IEP (calculated)

8.280

GRAVY (calculated)

-0.529

Length

334 amino acids

Sequence
(BLAST)

001: MSLCPTNLEG SYQFKLLITS DSCNLLLDQL KKLPVQIGHP VKGDAKKLAV YWREKITKNK SDELEVVCFL KFLGIYGIVS EFKTSDLLTL LDTSYWHTAC
101: PDLCQFLGLD NAITGFIQDL IKTGHRLKAV NYIYSFGMLH KFHPVSAIIN DSLRITKEAA EKAFRDAENE PASQVAAIDR QIRSLRAGIK CITCHKLESE
201: FQLEDLEERI KSLLKLRRNV SDTAEPPSLG EVGSVSSNNT RLEHSTTAVS SSASKPGSRG QKRSQSSVHV ASYTSNHFPE HGSSLNQRLT WPPVDHYSRG
301: FNSDYNHNQW TRPEGPPQYQ QYYQQYDPYH RNHF

Best Arabidopsis Sequence Match ( AT5G27230.1 )
(BLAST)

001: MEKVTSGLEL VDISKRNFRK TLESLQEGAH SLLLLTIQWK EIESYFDSTR SVLEERAKEL EALEESIKVK ALELEKKEKE LCLIDESMKA KQSEFEKKEK
101: DFDLEQKAEV EKRKREVEQL EKFTTRMESV ERVSDEKLME LGLRATELEL KMEEVEKHRE RIVAGDKLRG EFEPLVSLLA KNMGLSVTMP VKCSTLYLNE
201: NADEMVKKNT ALARMVPYLD PAKVVLDAIE GSFKEYWKKD LGEADDRVVN SWIVLLENLI KMNLKITPQV KQEATPLGIA WLGKAKANMK NDPPQVFGCA
301: LFLAAYGLGS LTTHGVLLTL VERFLLYDHA PKLFRLLGLE EKVSGAVETL KKKEEYLATL KFICEFRLYK LCPGGRPGEL LIEFFDSSDK AARVIAGTGT
401: SMEAQKARRE KKKADAAMAI KYIKEAKAET MFPAKILKRL AVVKNDESAQ RAMEPVQKSY EKRQSTTKGV EKSEAKSSIP YEQKHVIKRP RLTEPTAPSQ
501: NLTVKQPEVV CVPTGKQVKE SGADHQPDTI ATHPSGTETK LNILSGSIKA DMLRELVEKQ PLKESEDLSN ALKCTPDPAK LFLDTSMALC PTNTEGGYEF
601: KMLITSASCS LLLNQLKKLL PKIGHPVKGD AKKLAVYWKD KIAKSKRDQL EVICFLQFLG IFGIVSEFKA DDLLGLLDNS YWQTVSPDLC QFLGLDDAIP
701: GFIQNLIKTG HRIKAIDYIY SFGMVHRFQP VSAIINDSLR ITKESAEKSY REAKNESTTQ VAAIDRQVRA LRAAIKCISC HKLESEFQLG DLEEQIKSLL
801: KLRRNTSNGS GSGSASSKPD STIKQSQTAK PPTVAEVAPV TSNIPLEPST EAASSSASKP FSKKNKRGKK RSMSGNNQSS GHIASHTSNH YPSHDYSLNQ
901: RLTWPVDNYD RGFTGFPNPD YNNNQWGQPE GPQFYHLYQP LDPRYRNY

Arabidopsis Description

FRL5FRIGIDA-like protein 5 [Source:UniProtKB/Swiss-Prot;Acc:Q5XV31]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.