CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX69452
CDX71688
CDY05835
CDY32645
CDY33404
CDY35602
CDY38847
CDY42958
CDY55572
CDY64735
CDY67200

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G00650.1	CDY33404	AT2G06005.1	19429606
AT4G00650.1	CDY64735	AT2G06005.1	19429606
AT4G00650.1	CDX71688	AT4G00650.1	17138694
AT4G00650.1	CDY05835	AT4G00650.1	17138694
AT4G00650.1	CDY32645	AT4G00650.1	17138694
AT4G00650.1	CDY38847	AT4G00650.1	17138694
AT4G00650.1	CDX71688	AT4G00650.1	19429606
AT4G00650.1	CDY05835	AT4G00650.1	19429606
AT4G00650.1	CDY32645	AT4G00650.1	19429606
AT4G00650.1	CDY38847	AT4G00650.1	19429606
AT4G00650.1	CDY35602	AT4G17060.1	19429606
AT4G00650.1	CDY42958	AT4G17060.1	19429606
AT4G00650.1	CDX69452	AT5G16320.1	19429606
AT4G00650.1	CDY55572	AT5G16320.1	19429606
AT4G00650.1	CDY67200	AT5G16320.1	19429606

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY05835	Canola	cytosol, nucleus, plastid	56.92	92.76
CDY32645	Canola	nucleus	71.79	72.04
CDY38847	Canola	nucleus, plastid	70.6	69.3
AT4G00650.1	Thale cress	plastid	29.74	55.41
VIT_19s0014g00030.t01	Wine grape	cytosol, golgi, nucleus	20.17	40.55
KRH54046	Soybean	nucleus	30.77	30.41
KRH63904	Soybean	nucleus	30.6	29.78
Solyc03g117930.2.1	Tomato	nucleus	27.69	27.55
Solyc03g117910.2.1	Tomato	plastid	16.07	27.25
PGSC0003DMT400037427	Potato	nucleus, plastid	24.1	25.5
Solyc12g042440.1.1	Tomato	nucleus, plastid	23.59	25.23
PGSC0003DMT400084922	Potato	cytosol	16.58	24.49
VIT_19s0014g00060.t01	Wine grape	nucleus	13.16	24.29
Solyc06g074450.1.1	Tomato	cytosol, mitochondrion, nucleus, peroxisome	21.88	22.38
CDY55572	Canola	nucleus	13.5	22.07
PGSC0003DMT400080001	Potato	nucleus	26.84	21.93
Solyc04g072200.1.1	Tomato	cytosol	26.32	21.42
Solyc03g117920.1.1	Tomato	nucleus	12.82	21.01
PGSC0003DMT400080000	Potato	nucleus	26.84	20.85
Os03t0851400-01	Rice	extracellular	15.56	20.78
CDY12290	Canola	cytosol	15.56	20.45
CDY00062	Canola	cytosol, mitochondrion, nucleus, plastid	7.35	20.19
PGSC0003DMT400094724	Potato	nucleus	26.15	19.62
CDY19713	Canola	cytosol	9.91	19.08
CDX69452	Canola	cytosol	14.7	19.07
EER93089	Sorghum	plastid	15.04	19.05
CDY67951	Canola	cytosol	14.87	18.87
CDY67200	Canola	cytosol, nucleus	4.44	18.57
CDX99994	Canola	peroxisome	10.6	18.56
CDY05684	Canola	cytosol	16.07	18.18
CDY48750	Canola	cytosol	16.07	17.84
CDY34252	Canola	cytosol, nucleus, plastid	15.38	17.24
CDY00066	Canola	cytosol	15.73	17.23
CDY46317	Canola	cytosol, nucleus, plastid	15.38	17.14
TraesCS4A01G329000.1	Wheat	plastid	14.36	16.97
HORVU5Hr1G122680.1	Barley	mitochondrion, peroxisome, plastid	15.21	16.73
TraesCS5B01G543400.1	Wheat	plastid	14.02	15.74
CDY38318	Canola	nucleus	14.19	15.63
TraesCS5D01G544800.1	Wheat	mitochondrion	14.87	15.51
CDX99996	Canola	extracellular	4.1	14.91
CDX86173	Canola	cytosol	14.19	9.61
CDX80668	Canola	cytosol, mitochondrion, plasma membrane	13.68	8.97
CDX86307	Canola	nucleus	15.73	6.16
CDX85335	Canola	cytosol, endoplasmic reticulum, mitochondrion, plasma membrane	16.24	5.88
CDX99995	Canola	cytosol, nucleus, peroxisome	3.42	4.18
CDY19712	Canola	cytosol, nucleus, peroxisome	3.08	3.76

Protein Annotations

EnsemblPlants:CDX71688	EnsemblPlantsGene:GSBRNA2T00152364001	GO:GO:0000003	GO:GO:0007275	GO:GO:0008150	GO:GO:0009791
GO:GO:0009908	GO:GO:0009987	GO:GO:0030154	InterPro:Frigida	PANTHER:PTHR31791	PANTHER:PTHR31791:SF3
PFAM:PF07899	ProteinID:AFA43306.1	ProteinID:CDX71688	ProteinID:CDX71688.1	SEG:seg	UniParc:UPI00024FB1B1
UniProt:H6VVI8	MapMan:35.1	:	:	:	:

Description

BnaC09g27290DFRIGIDA-like protein [Source:UniProtKB/TrEMBL;Acc:H6VVI8]

Coordinates

chrLK031794:+:3029394..3031521

Molecular Weight (calculated)

65324.5 Da

IEP (calculated)

9.230

GRAVY (calculated)

-0.449

Length

585 amino acids

Sequence
(BLAST)

001: MAFRNDSLIP ARDPSTRENK PSSPTIQRGT VPTNTEITIE QSNHPQFLKS IDDLTAFAAA MDAFKRHYDD LQNHMDYIKN AIGSSLKFKG IIAESPSSRS
101: QSPRNDASGE TATAVAATQS PPKETSETVP EISDKVERLC ELMCSKGLRR YMYSNISDRA KLIEELPAAL KLAKEPAKFV LECIGKFFLQ GRKAYASDSH
201: MIPARQVSLL ILECYLLMLD PSEEKKPIDG SIKDEAEAAA VAWKKRMMNE GRLAAAEAMD ARGLLLLIAC FGIPSSFKSM DLFDLVRKSG TAEIAAALKR
301: SPFLVPMMSG IVDLSIKRGK HIEALGMIYT FGIEDRFSAS SLLTSFLRMS KESFERAKQK AQAPIAFKEA NQKFLAALLS VMKCLEAHNL DPEKEVQGWQ
401: IKEQMIKLEK DILQLDKQMQ GEARSISLME ETALTKRLYN QQMKRPRLSD MEMPPAASSS YSSTYPARSF PSHRDDEISA LVSSYLEPSP GFPHRSSLRS
501: SPEYLAPPSG LGRSVPAYEH LPPTSYLPLP RRHSPVHGQR LPGEYSPPIH GQEQISYGRL QRVYRHSPSV ERYLALPNHR SPRNS

Best Arabidopsis Sequence Match ( AT4G00650.1 )
(BLAST)

001: MSNYPPTVAA QPTTTANPLL QRHQSEQRRR ELPKIVETES TSMDITIGQS KQPQFLKSID ELAAFSVAVE TFKRQFDDLQ KHIESIENAI DSKLESNGVV
101: LAARNNNFHQ PMLSPPRNNV SVETTVTVSQ PSQEIVPETS NKPEGERICE LMCSKGLRKY IYANISDQAK LMEEIPSALK LAKEPAKFVL DCIGKFYLQG
201: RRAFTKESPM SSARQVSLLI LESFLLMPDR GKGKVKIESW IKDEAETAAV AWRKRLMTEG GLAAAEKMDA RGLLLLVACF GVPSNFRSTD LLDLIRMSGS
301: NEIAGALKRS QFQV

Arabidopsis Description

FRIInactive protein FRIGIDA [Source:UniProtKB/Swiss-Prot;Acc:Q67Z93]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.