Factsheet for TraesCS5D01G544800.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G216300.1
TraesCS1B01G229500.1
TraesCS1D01G218500.1
TraesCS4A01G329000.1
TraesCS5B01G543400.1
TraesCS5D01G544800.1
TraesCS6A01G336900.1
TraesCS6B01G367400.1
TraesCS6D01G317300.1
TraesCS7A01G163400.1
TraesCS7B01G069200.1
TraesCS7D01G165500.3

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G00650.1	TraesCS6A01G336900.1	AT2G06005.1	19429606
AT4G00650.1	TraesCS6B01G367400.1	AT2G06005.1	19429606
AT4G00650.1	TraesCS6D01G317300.1	AT2G06005.1	19429606
AT4G00650.1	TraesCS7A01G163400.1	AT2G06005.1	19429606
AT4G00650.1	TraesCS7B01G069200.1	AT2G06005.1	19429606
AT4G00650.1	TraesCS7D01G165500.3	AT2G06005.1	19429606
AT4G00650.1	TraesCS4A01G329000.1	AT4G00650.1	17138694
AT4G00650.1	TraesCS5B01G543400.1	AT4G00650.1	17138694
AT4G00650.1	TraesCS5D01G544800.1	AT4G00650.1	17138694
AT4G00650.1	TraesCS4A01G329000.1	AT4G00650.1	19429606
AT4G00650.1	TraesCS5B01G543400.1	AT4G00650.1	19429606
AT4G00650.1	TraesCS5D01G544800.1	AT4G00650.1	19429606
AT4G00650.1	TraesCS1A01G216300.1	AT4G17060.1	19429606
AT4G00650.1	TraesCS1B01G229500.1	AT4G17060.1	19429606
AT4G00650.1	TraesCS1D01G218500.1	AT4G17060.1	19429606

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G329000.1	Wheat	plastid	82.71	93.74
TraesCS5B01G543400.1	Wheat	plastid	83.78	90.21
HORVU5Hr1G122680.1	Barley	mitochondrion, peroxisome, plastid	72.01	75.94
Os03t0851400-01	Rice	extracellular	36.19	46.35
EER93089	Sorghum	plastid	37.08	45.02
VIT_19s0014g00030.t01	Wine grape	cytosol, golgi, nucleus	15.15	29.21
CDY05835	Canola	cytosol, nucleus, plastid	13.19	20.61
Solyc03g117910.2.1	Tomato	plastid	12.66	20.58
Bra035723.1-P	Field mustard	plastid	13.19	20.22
AT4G00650.1	Thale cress	plastid	11.23	20.06
PGSC0003DMT400084922	Potato	cytosol	12.83	18.18
KRH63904	Soybean	nucleus	16.93	15.81
KRH54046	Soybean	nucleus	16.58	15.71
TraesCS5D01G172300.2	Wheat	cytosol	15.15	15.34
CDX71688	Canola	nucleus	15.51	14.87
TraesCS5D01G442300.1	Wheat	cytosol	14.08	14.31
CDY32645	Canola	nucleus	14.79	14.24
Bra029192.1-P	Field mustard	nucleus, plastid	14.79	14.14
CDY38847	Canola	nucleus, plastid	14.97	14.09
TraesCS4D01G265900.1	Wheat	nucleus	12.3	13.86
Solyc03g117930.2.1	Tomato	nucleus	14.44	13.78
Solyc12g042440.1.1	Tomato	nucleus, plastid	13.37	13.71
PGSC0003DMT400037427	Potato	nucleus, plastid	12.83	13.02
TraesCS1D01G411200.1	Wheat	nucleus	14.26	12.7
PGSC0003DMT400080000	Potato	nucleus	15.33	11.42
Solyc06g074450.1.1	Tomato	cytosol, mitochondrion, nucleus, peroxisome	11.41	11.19
PGSC0003DMT400094724	Potato	nucleus	15.51	11.15
TraesCS3D01G119200.1	Wheat	cytosol, nucleus, plastid	12.83	10.93
PGSC0003DMT400080001	Potato	nucleus	13.55	10.61
Solyc04g072200.1.1	Tomato	cytosol	13.55	10.57
VIT_19s0014g00060.t01	Wine grape	nucleus	3.92	6.94
Solyc03g117920.1.1	Tomato	nucleus	2.67	4.2

Protein Annotations

EnsemblPlants:TraesCS5D01G544800.1	EnsemblPlantsGene:TraesCS5D01G544800	InterPro:Frigida	PANTHER:PTHR31791	PANTHER:PTHR31791:SF28	PFAM:PF07899
SEG:seg	MapMan:35.1	:	:	:	:

Description

No Description!

Coordinates

chr5D:+:554357761..554360305

Molecular Weight (calculated)

61414.8 Da

IEP (calculated)

7.044

GRAVY (calculated)

-0.304

Length

561 amino acids

Sequence
(BLAST)

001: MIRIAKKRKA IRHAFLPSLV GWRLSTCLAV RRSQPARPAT PPRLSPMLPP PPPPPAVPAT SAAAAYASLA AIASSVEGLA SFNEVLVEFL DEWREFHLDA
101: NSIAAALPPL ADDDADPDPK PSPVGQLGAL LSQWNPVLPA AAASPLAADR VAEGSNPRLP DRGAERREHS PVPQDPLHQR DESIPKPDPV VERRERNPLP
201: APQPHTSAAA AAAGFPVADP VPEPEPKPVL PAEVGPVRAP KPAPKPAPGR ERRASEQEAE MLGGICEQMG SRSLRGFVTT HLRDRAWLRR VGPAALRRAP
301: DPAVLVIRAV SRSYICAESE NAETACVLLL ELYVRAGCPR RPEGEGEAEV RAEARVSALS WRSRIVREKG RVADASARDA RGLILLMAAF GVPLEFPLQE
401: LYQLLLAGGC LTCVDVLRCS QPFMKKLRDV VADMLNRGSY REAIGVILAF DLQEAFPLDG VLSYIVDKVV RNRKEQESEV ECDLAGSKKR DEEELLLWRS
501: ISKYVEERTP CFSEMSCPSL AERIKVLEER VGKPNQTFLS EESREPSFSE RREPNQAFLM I

Best Arabidopsis Sequence Match ( AT4G00650.1 )
(BLAST)

001: MSNYPPTVAA QPTTTANPLL QRHQSEQRRR ELPKIVETES TSMDITIGQS KQPQFLKSID ELAAFSVAVE TFKRQFDDLQ KHIESIENAI DSKLESNGVV
101: LAARNNNFHQ PMLSPPRNNV SVETTVTVSQ PSQEIVPETS NKPEGERICE LMCSKGLRKY IYANISDQAK LMEEIPSALK LAKEPAKFVL DCIGKFYLQG
201: RRAFTKESPM SSARQVSLLI LESFLLMPDR GKGKVKIESW IKDEAETAAV AWRKRLMTEG GLAAAEKMDA RGLLLLVACF GVPSNFRSTD LLDLIRMSGS
301: NEIAGALKRS QFQV

Arabidopsis Description

FRIInactive protein FRIGIDA [Source:UniProtKB/Swiss-Prot;Acc:Q67Z93]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.