Factsheet for Solyc12g042440.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 4
plastid 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc03g117910.2.1
Solyc03g117920.1.1
Solyc03g117930.2.1
Solyc04g072200.1.1
Solyc06g074450.1.1
Solyc08g007170.1.1
Solyc12g009100.1.1
Solyc12g042440.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G00650.1	Solyc12g009100.1.1	AT2G06005.1	19429606
AT4G00650.1	Solyc03g117910.2.1	AT4G00650.1	17138694
AT4G00650.1	Solyc03g117920.1.1	AT4G00650.1	17138694
AT4G00650.1	Solyc03g117930.2.1	AT4G00650.1	17138694
AT4G00650.1	Solyc04g072200.1.1	AT4G00650.1	17138694
AT4G00650.1	Solyc06g074450.1.1	AT4G00650.1	17138694
AT4G00650.1	Solyc12g042440.1.1	AT4G00650.1	17138694
AT4G00650.1	Solyc03g117910.2.1	AT4G00650.1	19429606
AT4G00650.1	Solyc03g117920.1.1	AT4G00650.1	19429606
AT4G00650.1	Solyc03g117930.2.1	AT4G00650.1	19429606
AT4G00650.1	Solyc04g072200.1.1	AT4G00650.1	19429606
AT4G00650.1	Solyc06g074450.1.1	AT4G00650.1	19429606
AT4G00650.1	Solyc12g042440.1.1	AT4G00650.1	19429606
AT4G00650.1	Solyc08g007170.1.1	AT4G17060.1	19429606

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400037427	Potato	nucleus, plastid	93.05	92.04
VIT_19s0014g00030.t01	Wine grape	cytosol, golgi, nucleus	18.46	34.71
Solyc03g117920.1.1	Tomato	nucleus	22.3	34.17
Solyc03g117930.2.1	Tomato	nucleus	35.47	32.99
Solyc03g117910.2.1	Tomato	plastid	19.93	31.59
Solyc06g074450.1.1	Tomato	cytosol, mitochondrion, nucleus, peroxisome	30.35	29.02
Solyc04g072200.1.1	Tomato	cytosol	37.29	28.37
KRH63904	Soybean	nucleus	30.71	27.95
KRH54046	Soybean	nucleus	29.07	26.86
CDY05835	Canola	cytosol, nucleus, plastid	17.37	26.46
Bra035723.1-P	Field mustard	plastid	17.37	25.96
VIT_19s0014g00060.t01	Wine grape	nucleus	14.81	25.55
AT4G00650.1	Thale cress	plastid	14.63	25.48
CDY32645	Canola	nucleus	25.59	24.01
Bra029192.1-P	Field mustard	nucleus, plastid	25.41	23.68
CDX71688	Canola	nucleus	25.23	23.59
CDY38847	Canola	nucleus, plastid	25.59	23.49
Solyc06g082930.2.1	Tomato	nucleus	17.55	17.94
Solyc06g007640.2.1	Tomato	nucleus	17.0	17.35
Solyc09g076050.2.1	Tomato	nucleus	15.36	16.34
EER93089	Sorghum	plastid	13.71	16.23
Os03t0851400-01	Rice	extracellular	12.98	16.21
TraesCS4A01G329000.1	Wheat	plastid	13.71	15.15
Solyc11g071340.1.1	Tomato	nucleus	12.98	14.82
HORVU5Hr1G122680.1	Barley	mitochondrion, peroxisome, plastid	14.08	14.47
TraesCS5B01G543400.1	Wheat	plastid	13.71	14.4
TraesCS5D01G544800.1	Wheat	mitochondrion	13.71	13.37
Solyc04g008840.2.1	Tomato	nucleus	13.35	12.13

Protein Annotations

EnsemblPlants:Solyc12g042440.1.1	EnsemblPlantsGene:Solyc12g042440.1	GO:GO:0000003	GO:GO:0007275	GO:GO:0008150	GO:GO:0009791
GO:GO:0009908	GO:GO:0009987	GO:GO:0030154	InterPro:Frigida	ncoils:Coil	PANTHER:PTHR31791
PANTHER:PTHR31791:SF3	PFAM:PF07899	SEG:seg	UniParc:UPI000276AB23	UniProt:K4DF37	MapMan:35.1

Description

FRIGIDA-like protein [Source:UniProtKB/TrEMBL;Acc:K4DF37]

Coordinates

chr12:+:40178077..40184855

Molecular Weight (calculated)

60813.4 Da

IEP (calculated)

8.246

GRAVY (calculated)

-0.472

Length

547 amino acids

Sequence
(BLAST)

001: MENLADSAVS QTSTAAGQHP QTADTTPSPA SPPSASNQTS SEEKDSKSPD SQLETLCKTM CGKGLRSYIL SKLPEKNTLR EELTKALKLA PNAAKLVLSC
101: MGDFFAKRGK AFDKDARMIA TREASALVLE CFLLIGFDVI DEGVKEEAAQ AAVIWRRRFV DERGIRKAST MDARGLLLLI GCFGIPQIFY NEDIRDLIRV
201: SNIREISTAL RRSNVLMEKI PDIIAGMVKN KMEVDAVDVA YTFGVEEKCS PCEILSSFLE ELRESLKKKK CQSHGSHAVV NEANKRELST MKSVIECLEA
301: HNIDPSKLIP RFRISDRIMS LEEKIARNDQ RREKMVQNRK FEETGLSRRF EERRAKRACI LDSEHHRPVN YISSQRPLLA GLPPSHIYGY SVSPSALPIH
401: DIVPGSPAAS WGGMVMGGVS SGIIRSRNDA LQAGAYGGFR ERIPIEHKTG QIRSYNNQLY EWQENASMHE REVSHNYGYG SSPSWQGSME LPNPVPVGPG
501: YQTAASDPYQ LASTVQSSPY HNRGVVPSVN HYSSYLYPGT YYPQGMQ

Best Arabidopsis Sequence Match ( AT4G00650.1 )
(BLAST)

001: MSNYPPTVAA QPTTTANPLL QRHQSEQRRR ELPKIVETES TSMDITIGQS KQPQFLKSID ELAAFSVAVE TFKRQFDDLQ KHIESIENAI DSKLESNGVV
101: LAARNNNFHQ PMLSPPRNNV SVETTVTVSQ PSQEIVPETS NKPEGERICE LMCSKGLRKY IYANISDQAK LMEEIPSALK LAKEPAKFVL DCIGKFYLQG
201: RRAFTKESPM SSARQVSLLI LESFLLMPDR GKGKVKIESW IKDEAETAAV AWRKRLMTEG GLAAAEKMDA RGLLLLVACF GVPSNFRSTD LLDLIRMSGS
301: NEIAGALKRS QFQV

Arabidopsis Description

FRIInactive protein FRIGIDA [Source:UniProtKB/Swiss-Prot;Acc:Q67Z93]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.