CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX69452
CDX71688
CDY05835
CDY32645
CDY33404
CDY35602
CDY38847
CDY42958
CDY55572
CDY64735
CDY67200

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G00650.1	CDY33404	AT2G06005.1	19429606
AT4G00650.1	CDY64735	AT2G06005.1	19429606
AT4G00650.1	CDX71688	AT4G00650.1	17138694
AT4G00650.1	CDY05835	AT4G00650.1	17138694
AT4G00650.1	CDY32645	AT4G00650.1	17138694
AT4G00650.1	CDY38847	AT4G00650.1	17138694
AT4G00650.1	CDX71688	AT4G00650.1	19429606
AT4G00650.1	CDY05835	AT4G00650.1	19429606
AT4G00650.1	CDY32645	AT4G00650.1	19429606
AT4G00650.1	CDY38847	AT4G00650.1	19429606
AT4G00650.1	CDY35602	AT4G17060.1	19429606
AT4G00650.1	CDY42958	AT4G17060.1	19429606
AT4G00650.1	CDX69452	AT5G16320.1	19429606
AT4G00650.1	CDY55572	AT5G16320.1	19429606
AT4G00650.1	CDY67200	AT5G16320.1	19429606

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra029192.1-P	Field mustard	nucleus, plastid	96.98	98.47
CDY32645	Canola	nucleus	89.26	91.25
CDX71688	Canola	nucleus	69.3	70.6
CDY05835	Canola	cytosol, nucleus, plastid	41.61	69.08
AT4G00650.1	Thale cress	plastid	27.68	52.55
VIT_19s0014g00030.t01	Wine grape	cytosol, golgi, nucleus	18.79	38.49
KRH63904	Soybean	nucleus	31.21	30.95
KRH54046	Soybean	nucleus	30.7	30.91
Solyc03g117910.2.1	Tomato	plastid	15.6	26.96
Solyc03g117930.2.1	Tomato	nucleus	26.51	26.87
PGSC0003DMT400037427	Potato	nucleus, plastid	24.16	26.04
Solyc12g042440.1.1	Tomato	nucleus, plastid	23.49	25.59
PGSC0003DMT400084922	Potato	cytosol	15.6	23.48
Solyc06g074450.1.1	Tomato	cytosol, mitochondrion, nucleus, peroxisome	22.48	23.43
VIT_19s0014g00060.t01	Wine grape	nucleus	12.42	23.34
PGSC0003DMT400080001	Potato	nucleus	26.34	21.93
Solyc04g072200.1.1	Tomato	cytosol	25.5	21.14
Os03t0851400-01	Rice	extracellular	14.93	20.32
PGSC0003DMT400080000	Potato	nucleus	25.5	20.19
CDY19713	Canola	cytosol	10.23	20.07
CDY05684	Canola	cytosol	17.28	19.92
CDY12290	Canola	cytosol	14.77	19.78
CDX99994	Canola	peroxisome	11.07	19.76
CDY00062	Canola	cytosol, mitochondrion, nucleus, plastid	7.05	19.72
CDY55572	Canola	nucleus	11.74	19.55
CDY48750	Canola	cytosol	17.28	19.54
PGSC0003DMT400094724	Potato	nucleus	25.5	19.49
CDY00066	Canola	cytosol	17.45	19.48
EER93089	Sorghum	plastid	14.93	19.26
Solyc03g117920.1.1	Tomato	nucleus	11.41	19.05
CDY67951	Canola	cytosol	14.09	18.22
CDX99996	Canola	extracellular	4.7	17.39
CDY34252	Canola	cytosol, nucleus, plastid	14.93	17.05
CDX69452	Canola	cytosol	12.75	16.85
CDY46317	Canola	cytosol, nucleus, plastid	14.77	16.76
TraesCS4A01G329000.1	Wheat	plastid	13.76	16.57
HORVU5Hr1G122680.1	Barley	mitochondrion, peroxisome, plastid	14.6	16.35
CDY67200	Canola	cytosol, nucleus	3.69	15.71
TraesCS5B01G543400.1	Wheat	plastid	13.42	15.36
TraesCS5D01G544800.1	Wheat	mitochondrion	14.09	14.97
CDY38318	Canola	nucleus	13.09	14.69
CDX86173	Canola	cytosol	15.27	10.53
CDX80668	Canola	cytosol, mitochondrion, plasma membrane	14.77	9.87
CDX86307	Canola	nucleus	16.61	6.63
CDX85335	Canola	cytosol, endoplasmic reticulum, mitochondrion, plasma membrane	17.28	6.37
CDY19712	Canola	cytosol, nucleus, peroxisome	2.52	3.13
CDX99995	Canola	cytosol, nucleus, peroxisome	2.35	2.92

Protein Annotations

EnsemblPlants:CDY38847	EnsemblPlantsGene:GSBRNA2T00066686001	GO:GO:0000003	GO:GO:0007275	GO:GO:0008150	GO:GO:0009791
GO:GO:0009908	GO:GO:0009987	GO:GO:0030154	InterPro:Frigida	ncoils:Coil	PANTHER:PTHR31791
PANTHER:PTHR31791:SF3	PFAM:PF07899	ProteinID:AFA43304.1	ProteinID:CDY38847	ProteinID:CDY38847.1	SEG:seg
UniParc:UPI00024FB1AF	UniProt:H6VVI6	MapMan:35.1	:	:	:

Description

BnaA03g13320DFRIGIDA-like protein [Source:UniProtKB/TrEMBL;Acc:H6VVI6]

Coordinates

chrLK032434:+:16008..18189

Molecular Weight (calculated)

66613.0 Da

IEP (calculated)

8.336

GRAVY (calculated)

-0.459

Length

596 amino acids

Sequence
(BLAST)

001: MAVRNGSLLP APSTREEEQP SSAMIQRREA QATVETVPTN IETTIEQSND PQFLKSIVDL TALAAAVDVF KRRYDELQSH MDYIENAIDS NLKTNGIIET
101: AAASPPPPNK TATAVACQSP PKEKSEAERF CESMWSKELR RYMFVNISER AKLIEEIPGA LKLAKDPAKF VLDCIGKFYL QGRKAFAKDL PAITARKVSL
201: LILECYLLTF DPEGEKKKKL LVSSVKDEAE AAAVAWKKRL VGEGWLGAAE AMDARGLLLL VACFGIPESF KSMDLLDLIR QSGTAEIVGA LKRSPFLVPI
301: MSGIVDSSFK RGMHIEALEL VYTFGMEDRF SPSSILTSFL RMRKDSFERA KRQAQAPMAS KTANEKQLDA LSSVMKCLEA HKLDPAKEVP GWQIKEQMAK
401: LEKDIVQLDK QMEEARSISR MEEARSISRM EEARSISIRE EAAISERLYN QQMKRPRLSE MEMPPTAAAS YSPMYRDHRS FPSHREGDAD EISALVSSYL
501: GPSSGFPHRS GLMRSPEYMV PPGGLGRSVS AYDHLPPNSY SPVHGQRRPQ EYPPPVHGQH QMPYGLYRHS PSVERHLALS NHRTPRNLSQ DRIGGM

Best Arabidopsis Sequence Match ( AT4G00650.1 )
(BLAST)

001: MSNYPPTVAA QPTTTANPLL QRHQSEQRRR ELPKIVETES TSMDITIGQS KQPQFLKSID ELAAFSVAVE TFKRQFDDLQ KHIESIENAI DSKLESNGVV
101: LAARNNNFHQ PMLSPPRNNV SVETTVTVSQ PSQEIVPETS NKPEGERICE LMCSKGLRKY IYANISDQAK LMEEIPSALK LAKEPAKFVL DCIGKFYLQG
201: RRAFTKESPM SSARQVSLLI LESFLLMPDR GKGKVKIESW IKDEAETAAV AWRKRLMTEG GLAAAEKMDA RGLLLLVACF GVPSNFRSTD LLDLIRMSGS
301: NEIAGALKRS QFQV

Arabidopsis Description

FRIInactive protein FRIGIDA [Source:UniProtKB/Swiss-Prot;Acc:Q67Z93]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.