Factsheet for PGSC0003DMT400080001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
nucleus 3
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400036725
PGSC0003DMT400037427
PGSC0003DMT400048982
PGSC0003DMT400052836
PGSC0003DMT400080000
PGSC0003DMT400080001
PGSC0003DMT400084922
PGSC0003DMT400094724

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G00650.1	PGSC0003DMT400048982	AT2G06005.1	19429606
AT4G00650.1	PGSC0003DMT400037427	AT4G00650.1	17138694
AT4G00650.1	PGSC0003DMT400080000	AT4G00650.1	17138694
AT4G00650.1	PGSC0003DMT400080001	AT4G00650.1	17138694
AT4G00650.1	PGSC0003DMT400084922	AT4G00650.1	17138694
AT4G00650.1	PGSC0003DMT400094724	AT4G00650.1	17138694
AT4G00650.1	PGSC0003DMT400037427	AT4G00650.1	19429606
AT4G00650.1	PGSC0003DMT400080000	AT4G00650.1	19429606
AT4G00650.1	PGSC0003DMT400080001	AT4G00650.1	19429606
AT4G00650.1	PGSC0003DMT400084922	AT4G00650.1	19429606
AT4G00650.1	PGSC0003DMT400094724	AT4G00650.1	19429606
AT4G00650.1	PGSC0003DMT400052836	AT4G17060.1	19429606
AT4G00650.1	PGSC0003DMT400036725	AT5G16320.1	19429606

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g072200.1.1	Tomato	cytosol	87.15	86.79
PGSC0003DMT400080000	Potato	nucleus	49.44	47.01
PGSC0003DMT400036725	Potato	nucleus	17.18	45.22
PGSC0003DMT400084922	Potato	cytosol	24.72	44.7
PGSC0003DMT400094724	Potato	nucleus	46.23	42.44
PGSC0003DMT400037427	Potato	nucleus, plastid	29.89	38.7
VIT_19s0014g00030.t01	Wine grape	cytosol, golgi, nucleus	13.83	34.02
AT4G00650.1	Thale cress	plastid	13.83	31.53
CDY05835	Canola	cytosol, nucleus, plastid	15.22	30.36
VIT_19s0014g00060.t01	Wine grape	nucleus	13.27	29.97
KRH63904	Soybean	nucleus	25.14	29.95
Bra035723.1-P	Field mustard	plastid	15.22	29.78
KRH54046	Soybean	nucleus	24.58	29.73
CDX71688	Canola	nucleus	21.93	26.84
CDY38847	Canola	nucleus, plastid	21.93	26.34
CDY32645	Canola	nucleus	21.37	26.24
Bra029192.1-P	Field mustard	nucleus, plastid	21.51	26.24
EER93089	Sorghum	plastid	12.29	19.05
Os03t0851400-01	Rice	extracellular	11.59	18.95
PGSC0003DMT400077344	Potato	nucleus	13.27	18.48
PGSC0003DMT400071153	Potato	nucleus	13.41	17.61
PGSC0003DMT400053214	Potato	cytosol	13.27	17.4
PGSC0003DMT400047832	Potato	nucleus	12.43	16.73
HORVU5Hr1G122680.1	Barley	mitochondrion, peroxisome, plastid	12.29	16.54
TraesCS4A01G329000.1	Wheat	plastid	10.61	15.35
TraesCS5B01G543400.1	Wheat	plastid	11.03	15.16
PGSC0003DMT400065090	Potato	nucleus	12.15	14.31
TraesCS5D01G544800.1	Wheat	mitochondrion	10.61	13.55

Protein Annotations

EnsemblPlants:PGSC0003DMT400080001	EnsemblPlantsGene:PGSC0003DMG400031151	GO:GO:0000003	GO:GO:0007275	GO:GO:0008150	GO:GO:0009791
GO:GO:0009908	GO:GO:0009987	GO:GO:0030154	InterPro:Frigida	ncoils:Coil	PANTHER:PTHR31791
PANTHER:PTHR31791:SF3	PFAM:PF07899	PGSC:PGSC0003DMG400031151	SEG:seg	UniParc:UPI000294B4C3	UniProt:M1D2U4
MapMan:35.1	:	:	:	:	:

Description

Protein FRIGIDA [Source:PGSC_GENE;Acc:PGSC0003DMG400031151]

Coordinates

chr4:+:61666507..61670554

Molecular Weight (calculated)

78604.6 Da

IEP (calculated)

5.084

GRAVY (calculated)

-0.628

Length

716 amino acids

Sequence
(BLAST)

001: MKKPTDSSAA AGATPRPDPP LNTESVRTEA QQSESQPKHS PELIIANLSK LSDGLFTFQR CLTDLEQHID SARTSIDSAM QLLLTPPPVT LPTPEPEPEP
101: SFESDPSEDE DEDEEEEDEV EKYEDEDEDE DEEKEEEEEE EEEEEEEEEE EELKSKSSSR SELEILCKTM DFAGLKRYIV RHISDKDGLR KQLPKALTLS
201: HNPARLVVQC INKGSKKHVK SSRGRASLLA MECLLLMMGE RRVVAIDKRT KNEAEQAALA WRARLISEGG IGTAQEMDAQ GLLLLIGCFG IPQGFMDRDI
301: RFLFKAGGAM EISGALRRSR VLMEKIPKII QWMLNNSLVV GAIDIAYTFG MGNRYNPRKI LTSFLHNSEV SYLNNTKGLE HQSIAVRAGK NKHLSDLKSV
401: GECLERHKID PSKLLPGWQI DVRIMNLEKD IADLNMHIGE KEVTELTRHI GDQKMTQKRK IGETESSGNF SNKEMKPSHF PNPNPNPWPL QQHRVVNHVD
501: DSNSTLLERG GTAGQIYGYS LAPSVLHGTV AGSIHQNAVG SLAGPVGGAV AMDGAGAGNS VKGGSCVGVH GGTLVDHTPS QIGSHTGQLY GPPGDAAVHD
601: RLASHTYAYR PPSYFEASGS MGLPNTMPGD AYRPPPYLEG SKGLPNNIPG DAYRPTPYME SSKGLRNNIS GDANQPPPYM EGSVRLPNTI PAPYQFADTV
701: PSAALAHPSP SLYWKR

Best Arabidopsis Sequence Match ( AT4G00650.1 )
(BLAST)

001: MSNYPPTVAA QPTTTANPLL QRHQSEQRRR ELPKIVETES TSMDITIGQS KQPQFLKSID ELAAFSVAVE TFKRQFDDLQ KHIESIENAI DSKLESNGVV
101: LAARNNNFHQ PMLSPPRNNV SVETTVTVSQ PSQEIVPETS NKPEGERICE LMCSKGLRKY IYANISDQAK LMEEIPSALK LAKEPAKFVL DCIGKFYLQG
201: RRAFTKESPM SSARQVSLLI LESFLLMPDR GKGKVKIESW IKDEAETAAV AWRKRLMTEG GLAAAEKMDA RGLLLLVACF GVPSNFRSTD LLDLIRMSGS
301: NEIAGALKRS QFQV

Arabidopsis Description

FRIInactive protein FRIGIDA [Source:UniProtKB/Swiss-Prot;Acc:Q67Z93]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.