Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400006576 | |
| PGSC0003DMT400077344 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G48385.1 | PGSC0003DMT400006576 | AT1G15570.1 | 21798944 |
| AT5G48385.1 | PGSC0003DMT400077344 | AT3G22440.1 | 21798944 |
| AT5G48385.1 | PGSC0003DMT400077344 | AT4G14900.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc06g007640.2.1 | Tomato | nucleus | 94.69 | 96.46 |
| PGSC0003DMT400071153 | Potato | nucleus | 77.84 | 77.98 |
| VIT_07s0151g00650.t01 | Wine grape | endoplasmic reticulum, extracellular | 71.43 | 69.27 |
| KRH66280 | Soybean | cytosol | 68.31 | 68.57 |
| KRH66282 | Soybean | cytosol | 67.95 | 67.95 |
| KRH07289 | Soybean | cytosol | 67.22 | 67.22 |
| CDY05684 | Canola | cytosol | 58.24 | 61.51 |
| Bra020704.1-P | Field mustard | cytosol | 58.06 | 61.08 |
| CDY48750 | Canola | cytosol | 58.61 | 60.72 |
| Bra036176.1-P | Field mustard | cytosol | 57.14 | 60.0 |
| AT5G48385.1 | Thale cress | cytosol | 60.07 | 58.78 |
| CDY00066 | Canola | cytosol | 57.14 | 58.43 |
| Bra037489.1-P | Field mustard | cytosol | 58.42 | 58.32 |
| GSMUA_Achr2P05710_001 | Banana | nucleus | 20.7 | 58.25 |
| GSMUA_Achr8P29000_001 | Banana | nucleus | 56.23 | 56.85 |
| GSMUA_Achr9P08130_001 | Banana | cytosol | 55.86 | 56.48 |
| CDY00062 | Canola | cytosol, mitochondrion, nucleus, plastid | 21.98 | 56.34 |
| EES02294 | Sorghum | nucleus | 53.66 | 54.66 |
| HORVU5Hr1G051330.1 | Barley | cytosol | 53.48 | 54.17 |
| Zm00001d005107_P001 | Maize | cytosol | 52.75 | 53.93 |
| TraesCS5A01G168100.1 | Wheat | cytosol | 53.11 | 53.8 |
| Os09t0248300-01 | Rice | cytosol | 53.11 | 53.51 |
| Zm00001d019890_P001 | Maize | nucleus | 52.2 | 53.37 |
| Zm00001d019892_P001 | Maize | nucleus | 39.38 | 53.09 |
| TraesCS5D01G172300.2 | Wheat | cytosol | 53.66 | 52.89 |
| Os09t0248200-01 | Rice | cytosol | 52.56 | 52.66 |
| TraesCS5B01G164900.2 | Wheat | cytosol | 53.3 | 52.53 |
| GSMUA_Achr3P16830_001 | Banana | endoplasmic reticulum, golgi | 56.41 | 52.38 |
| PGSC0003DMT400065090 | Potato | nucleus | 34.62 | 31.09 |
| PGSC0003DMT400077344 | Potato | nucleus | 28.02 | 29.77 |
| PGSC0003DMT400047832 | Potato | nucleus | 24.36 | 25.0 |
| CDX86307 | Canola | nucleus | 58.24 | 21.3 |
| CDX85335 | Canola | cytosol, endoplasmic reticulum, mitochondrion, plasma membrane | 59.16 | 19.98 |
| PGSC0003DMT400084922 | Potato | cytosol | 13.55 | 18.69 |
| PGSC0003DMT400037427 | Potato | nucleus, plastid | 16.67 | 16.46 |
| PGSC0003DMT400080000 | Potato | nucleus | 19.23 | 13.94 |
| PGSC0003DMT400080001 | Potato | nucleus | 17.4 | 13.27 |
| PGSC0003DMT400094724 | Potato | nucleus | 17.95 | 12.56 |
| PGSC0003DMT400036725 | Potato | nucleus | 3.3 | 6.62 |
| Bra037488.1-P | Field mustard | cytosol | 0.18 | 0.11 |
Protein Annotations
| EntrezGene:102577701 | MapMan:35.1 | ProteinID:ABB86244 | ProteinID:ABB86244.1 | ncoils:Coil | EMBL:DQ284456 |
| InterPro:Frigida | GO:GO:0000003 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0009791 | GO:GO:0009908 |
| GO:GO:0009987 | GO:GO:0030154 | UniProt:M1BUM0 | PFAM:PF07899 | EnsemblPlantsGene:PGSC0003DMG400020655 | PGSC:PGSC0003DMG400020655 |
| EnsemblPlants:PGSC0003DMT400053214 | PANTHER:PTHR31791 | PANTHER:PTHR31791:SF12 | UniParc:UPI0002967FB0 | RefSeq:XP_006344098.1 | SEG:seg |
Description
Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400020655]
Coordinates
chr6:+:2612528..2617660
Molecular Weight (calculated)
60951.5 Da
IEP (calculated)
6.457
GRAVY (calculated)
-0.461
Length
546 amino acids
Sequence
(BLAST)
(BLAST)
001: MEDTQSVATL MDSTTSKIQQ LQKAFAELES HRAVTLNLKW KQLEEHFHGL EKSLKRRFTE LEDQEKEFET KIVQSKKILE NRQAAVISCE KASLESLQEK
101: RDAAVSAITI AMEKHTKSNC MEPAGATPEV QGESSMFDAK PLDYIPLENT EDTMKPFKNG VVEVKCYPDL VELCQDMDSE GLHKFISDNR KNLAAVREEI
201: PSALRTAVDP ACLVLDSLKG FYPSEVSISD AKKDANLLGL RRTCIMLMEC LGILLTTLEL DSVSSLISAS VKGRAKAIAE EWKPKLDELD IDANNGNSLE
301: AHAFLQLLAT FGINSNFNQE DLYKLIPMVS RRRQTADLCR SLGLSERMPG VIDVLVNNGR HIDAVNLAFA FELTDKFSPV SLLKSYLNEA SKVSSPVKSG
401: NAPPTTAQND VNEKQLTALK AVIKCIEDHK LEAQYPVDPL QNRIHQLEKE KADKKRATEV AKPQPKRPRA NCVGNGARAT NVASDKNFYA SRMTDRYPQY
501: IYDRPYAYPG PADTHVPSFL GTAYNFPPGH GNFFGNGYHY QATYLH
101: RDAAVSAITI AMEKHTKSNC MEPAGATPEV QGESSMFDAK PLDYIPLENT EDTMKPFKNG VVEVKCYPDL VELCQDMDSE GLHKFISDNR KNLAAVREEI
201: PSALRTAVDP ACLVLDSLKG FYPSEVSISD AKKDANLLGL RRTCIMLMEC LGILLTTLEL DSVSSLISAS VKGRAKAIAE EWKPKLDELD IDANNGNSLE
301: AHAFLQLLAT FGINSNFNQE DLYKLIPMVS RRRQTADLCR SLGLSERMPG VIDVLVNNGR HIDAVNLAFA FELTDKFSPV SLLKSYLNEA SKVSSPVKSG
401: NAPPTTAQND VNEKQLTALK AVIKCIEDHK LEAQYPVDPL QNRIHQLEKE KADKKRATEV AKPQPKRPRA NCVGNGARAT NVASDKNFYA SRMTDRYPQY
501: IYDRPYAYPG PADTHVPSFL GTAYNFPPGH GNFFGNGYHY QATYLH
001: MEDTRSVASL MDSTSSKIQQ LQKAFAELES QRAVTLNLKW KELEEHFHGL ERSLKRRFHE LEDQEKEYET KTRKAQELLE KKKAAVEAKE KAALERLQKK
101: RDAAMFTINS ALDKYNNAPV SKPSVGERWP QNAVEDSSNV FAADSITDDN PDGIVQDVQI SPVMGNYEVK AYPQLLKLCG DMDSTGLHKF VSDNRKNLAS
201: LKEEIPMAFR AAANPASLVL DSLEGFYPME APTADGKKDA NLLGMRRTCI MLMECLSILL SGLDRNCLAV VLSQNVKHRA KTIAEGWNPL LESLDMDACN
301: GNSLEAHAFL QLLATFAIVA DFKEDELLKL IPMVSRRRQA AELCRSLGLA EKMPGVIEVL VNSGKQIDAV NLAFAFELTE QFSPVSLLKS YLIEARRSSP
401: QGRPGNASPA VQDEFNEREL IGLKTVIKCI EEHSLEEQYP VEPLHKRILQ LEKAKADKKR ATEPMKPQPK RPRGAQPRVT DNNNNINNNK TGYGRVIPER
501: YPQYVYDNRP FLSGPIMAAQ PPPPPPPQTY TFNPAPAHGN FYANCYQYQA PPPPPYFH
101: RDAAMFTINS ALDKYNNAPV SKPSVGERWP QNAVEDSSNV FAADSITDDN PDGIVQDVQI SPVMGNYEVK AYPQLLKLCG DMDSTGLHKF VSDNRKNLAS
201: LKEEIPMAFR AAANPASLVL DSLEGFYPME APTADGKKDA NLLGMRRTCI MLMECLSILL SGLDRNCLAV VLSQNVKHRA KTIAEGWNPL LESLDMDACN
301: GNSLEAHAFL QLLATFAIVA DFKEDELLKL IPMVSRRRQA AELCRSLGLA EKMPGVIEVL VNSGKQIDAV NLAFAFELTE QFSPVSLLKS YLIEARRSSP
401: QGRPGNASPA VQDEFNEREL IGLKTVIKCI EEHSLEEQYP VEPLHKRILQ LEKAKADKKR ATEPMKPQPK RPRGAQPRVT DNNNNINNNK TGYGRVIPER
501: YPQYVYDNRP FLSGPIMAAQ PPPPPPPQTY TFNPAPAHGN FYANCYQYQA PPPPPYFH
Arabidopsis Description
FRL3FRIGIDA-like protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q67ZB3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.