Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU5Hr1G051330.1 | Barley | cytosol | 97.59 | 97.59 |
| TraesCS5D01G172300.2 | Wheat | cytosol | 98.52 | 95.85 |
| TraesCS5B01G164900.2 | Wheat | cytosol | 97.77 | 95.13 |
| EES02294 | Sorghum | nucleus | 81.26 | 81.72 |
| Zm00001d005107_P001 | Maize | cytosol | 79.78 | 80.52 |
| Zm00001d019890_P001 | Maize | nucleus | 79.41 | 80.15 |
| Zm00001d019892_P001 | Maize | nucleus | 59.55 | 79.26 |
| Os09t0248200-01 | Rice | cytosol | 79.78 | 78.9 |
| Os09t0248300-01 | Rice | cytosol | 79.04 | 78.6 |
| GSMUA_Achr2P05710_001 | Banana | nucleus | 25.6 | 71.13 |
| GSMUA_Achr8P29000_001 | Banana | nucleus | 63.64 | 63.52 |
| GSMUA_Achr9P08130_001 | Banana | cytosol | 60.11 | 60.0 |
| GSMUA_Achr3P16830_001 | Banana | endoplasmic reticulum, golgi | 64.38 | 59.01 |
| CDY00062 | Canola | cytosol, mitochondrion, nucleus, plastid | 21.89 | 55.4 |
| VIT_07s0151g00650.t01 | Wine grape | endoplasmic reticulum, extracellular | 57.33 | 54.88 |
| KRH66282 | Soybean | cytosol | 55.29 | 54.58 |
| KRH07289 | Soybean | cytosol | 54.92 | 54.21 |
| Bra020704.1-P | Field mustard | cytosol | 52.13 | 54.14 |
| CDY48750 | Canola | cytosol | 52.88 | 54.08 |
| CDY05684 | Canola | cytosol | 51.76 | 53.97 |
| PGSC0003DMT400071153 | Potato | nucleus | 53.99 | 53.39 |
| KRH66280 | Soybean | cytosol | 53.8 | 53.31 |
| PGSC0003DMT400053214 | Potato | cytosol | 53.8 | 53.11 |
| Bra036176.1-P | Field mustard | cytosol | 51.21 | 53.08 |
| Solyc06g082930.2.1 | Tomato | nucleus | 52.5 | 52.9 |
| Solyc06g007640.2.1 | Tomato | nucleus | 52.5 | 52.8 |
| CDY00066 | Canola | cytosol | 51.95 | 52.43 |
| Bra037489.1-P | Field mustard | cytosol | 52.13 | 51.37 |
| AT5G48385.1 | Thale cress | cytosol | 52.5 | 50.72 |
| TraesCS1A01G403200.1 | Wheat | nucleus | 35.06 | 29.95 |
| TraesCS5A01G434500.1 | Wheat | cytosol | 26.35 | 25.63 |
| CDX86307 | Canola | nucleus | 51.95 | 18.75 |
| TraesCS3A01G117300.1 | Wheat | cytosol, nucleus, plastid | 22.08 | 18.2 |
| TraesCS4A01G039500.1 | Wheat | cytosol, nucleus, plasma membrane, plastid | 17.07 | 17.97 |
| CDX85335 | Canola | cytosol, endoplasmic reticulum, mitochondrion, plasma membrane | 52.5 | 17.5 |
| TraesCS4A01G329000.1 | Wheat | plastid | 14.47 | 15.76 |
| Bra037488.1-P | Field mustard | cytosol | 0.19 | 0.11 |
Protein Annotations
| EnsemblPlants:TraesCS5A01G168100.1 | EnsemblPlantsGene:TraesCS5A01G168100 | InterPro:Frigida | ncoils:Coil | PANTHER:PTHR31791 | PANTHER:PTHR31791:SF12 |
| PFAM:PF07899 | SEG:seg | MapMan:35.1 | : | : | : |
Description
No Description!
Coordinates
chr5A:+:357565084..357570178
Molecular Weight (calculated)
60865.1 Da
IEP (calculated)
7.881
GRAVY (calculated)
-0.504
Length
539 amino acids
Sequence
(BLAST)
(BLAST)
001: MSDMESVATL MESTSLKIEQ LQRAFAELES QSAVTMNFKW KQLEDHFRGL EQSLKKKFDE LKKQEKEFQE TVAKSEKMLE QQEAVVVAKE LTSLEKLQEK
101: RDAALAMIFG KSKLSLNTNY ITPINKPQSN YTVGTLDVKW PKHSPQGNAQ MQDGNAAVKP RSELAILCEE MNVKGLHKFI SDNRKNLTSI REEIPSALKG
201: ASQPYVLVLD SLEDFYSGDN LVLDGKKDGD LLGVRRTCLM LMESLVQLQA DDITGLLSEG QMFATNVKDR AKKIAFEWKS KLDSLDIDAS NGNCLEAHAF
301: LQLLATFGIF SEFNEDELCK LLPSVSRRRQ TPELCRLLGL SQKMPGVIGV LVDSARPIDA INLAYAFGLT EQFEPVQLLK AYLREVKKVS HAKNGKMSPG
401: AQNEMNEREL SALKAVIKCV EEHKLEEQYP VDPLQKRVIQ LEKAKADKRR AVEAAKPQSK RPRANGSLYA PRVTSFPEKS FYQATPERHP YPYERQFVYG
501: AEAHHHPTMM NAAPYTISPA HTPYYGNGYP VQYQVPYIH
101: RDAALAMIFG KSKLSLNTNY ITPINKPQSN YTVGTLDVKW PKHSPQGNAQ MQDGNAAVKP RSELAILCEE MNVKGLHKFI SDNRKNLTSI REEIPSALKG
201: ASQPYVLVLD SLEDFYSGDN LVLDGKKDGD LLGVRRTCLM LMESLVQLQA DDITGLLSEG QMFATNVKDR AKKIAFEWKS KLDSLDIDAS NGNCLEAHAF
301: LQLLATFGIF SEFNEDELCK LLPSVSRRRQ TPELCRLLGL SQKMPGVIGV LVDSARPIDA INLAYAFGLT EQFEPVQLLK AYLREVKKVS HAKNGKMSPG
401: AQNEMNEREL SALKAVIKCV EEHKLEEQYP VDPLQKRVIQ LEKAKADKRR AVEAAKPQSK RPRANGSLYA PRVTSFPEKS FYQATPERHP YPYERQFVYG
501: AEAHHHPTMM NAAPYTISPA HTPYYGNGYP VQYQVPYIH
001: MEDTRSVASL MDSTSSKIQQ LQKAFAELES QRAVTLNLKW KELEEHFHGL ERSLKRRFHE LEDQEKEYET KTRKAQELLE KKKAAVEAKE KAALERLQKK
101: RDAAMFTINS ALDKYNNAPV SKPSVGERWP QNAVEDSSNV FAADSITDDN PDGIVQDVQI SPVMGNYEVK AYPQLLKLCG DMDSTGLHKF VSDNRKNLAS
201: LKEEIPMAFR AAANPASLVL DSLEGFYPME APTADGKKDA NLLGMRRTCI MLMECLSILL SGLDRNCLAV VLSQNVKHRA KTIAEGWNPL LESLDMDACN
301: GNSLEAHAFL QLLATFAIVA DFKEDELLKL IPMVSRRRQA AELCRSLGLA EKMPGVIEVL VNSGKQIDAV NLAFAFELTE QFSPVSLLKS YLIEARRSSP
401: QGRPGNASPA VQDEFNEREL IGLKTVIKCI EEHSLEEQYP VEPLHKRILQ LEKAKADKKR ATEPMKPQPK RPRGAQPRVT DNNNNINNNK TGYGRVIPER
501: YPQYVYDNRP FLSGPIMAAQ PPPPPPPQTY TFNPAPAHGN FYANCYQYQA PPPPPYFH
101: RDAAMFTINS ALDKYNNAPV SKPSVGERWP QNAVEDSSNV FAADSITDDN PDGIVQDVQI SPVMGNYEVK AYPQLLKLCG DMDSTGLHKF VSDNRKNLAS
201: LKEEIPMAFR AAANPASLVL DSLEGFYPME APTADGKKDA NLLGMRRTCI MLMECLSILL SGLDRNCLAV VLSQNVKHRA KTIAEGWNPL LESLDMDACN
301: GNSLEAHAFL QLLATFAIVA DFKEDELLKL IPMVSRRRQA AELCRSLGLA EKMPGVIEVL VNSGKQIDAV NLAFAFELTE QFSPVSLLKS YLIEARRSSP
401: QGRPGNASPA VQDEFNEREL IGLKTVIKCI EEHSLEEQYP VEPLHKRILQ LEKAKADKKR ATEPMKPQPK RPRGAQPRVT DNNNNINNNK TGYGRVIPER
501: YPQYVYDNRP FLSGPIMAAQ PPPPPPPQTY TFNPAPAHGN FYANCYQYQA PPPPPYFH
Arabidopsis Description
FRL3FRIGIDA-like protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q67ZB3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.