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Maize
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Maize
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • cytosol 1
  • mitochondrion 1
  • nucleus 2
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, mitochondrion, nucleus
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
Zm00001d007835_P002
Zm00001d009716_P001
Zm00001d011373_P002
Zm00001d014756_P006
Zm00001d016081_P002
Zm00001d018911_P001
Zm00001d021067_P001
Zm00001d023732_P002
Zm00001d029487_P001
Zm00001d037122_P009
Zm00001d044191_P004
Zm00001d044979_P010
Zm00001d046072_P001
Zm00001d053382_P002

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G48385.1 Zm00001d009716_P001 AT1G01440.1 21798944
AT5G48385.1 Zm00001d011373_P002 AT1G01440.1 21798944
AT5G48385.1 Zm00001d016081_P002 AT1G01440.1 21798944
AT5G48385.1 Zm00001d044191_P004 AT1G01440.1 21798944
AT5G48385.1 Zm00001d046072_P001 AT1G01440.1 21798944
AT5G48385.1 Zm00001d053382_P002 AT1G01440.1 21798944
AT5G48385.1 Zm00001d014756_P006 AT1G15570.1 21798944
AT5G48385.1 Zm00001d023732_P002 AT1G15570.1 21798944
AT5G48385.1 Zm00001d021067_P001 AT3G08530.1 21798944
AT5G48385.1 Zm00001d029487_P001 AT3G13990.1 21798944
AT5G48385.1 Zm00001d037122_P009 AT3G13990.1 21798944
AT5G48385.1 Zm00001d044979_P010 AT3G13990.1 21798944
AT5G48385.1 Zm00001d007835_P002 AT3G22440.1 21798944
AT5G48385.1 Zm00001d018911_P001 AT3G22440.1 21798944
AT5G48385.1 Zm00001d007835_P002 AT4G14900.1 21798944
AT5G48385.1 Zm00001d018911_P001 AT4G14900.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d019892_P001 Maize nucleus 75.28 99.26
EES02294 Sorghum nucleus 92.7 92.35
Zm00001d005107_P001 Maize cytosol 92.32 92.32
HORVU5Hr1G051330.1 Barley cytosol 80.71 79.96
TraesCS5A01G168100.1 Wheat cytosol 80.15 79.41
TraesCS5D01G172300.2 Wheat cytosol 80.9 77.98
TraesCS5B01G164900.2 Wheat cytosol 80.52 77.62
Os09t0248300-01 Rice cytosol 73.97 72.88
Os09t0248200-01 Rice cytosol 73.22 71.74
GSMUA_Achr2P05710_001 Banana nucleus 23.6 64.95
GSMUA_Achr8P29000_001 Banana nucleus 61.05 60.37
GSMUA_Achr9P08130_001 Banana cytosol 58.61 57.96
GSMUA_Achr3P16830_001 Banana endoplasmic reticulum, golgi 61.61 55.95
KRH66282 Soybean cytosol 55.24 54.03
VIT_07s0151g00650.t01 Wine grape endoplasmic reticulum, extracellular 56.74 53.82
KRH07289 Soybean cytosol 54.68 53.48
KRH66280 Soybean cytosol 54.12 53.12
CDY00062 Canola cytosol, mitochondrion, nucleus, plastid 20.97 52.58
Solyc06g007640.2.1 Tomato nucleus 52.62 52.43
PGSC0003DMT400071153 Potato nucleus 53.37 52.29
PGSC0003DMT400053214 Potato cytosol 53.37 52.2
CDY05684 Canola cytosol 50.19 51.84
Bra020704.1-P Field mustard cytosol 50.37 51.83
CDY48750 Canola cytosol 51.12 51.8
Solyc06g082930.2.1 Tomato nucleus 51.87 51.78
Bra036176.1-P Field mustard cytosol 50.0 51.35
CDY00066 Canola cytosol 50.75 50.75
Bra037489.1-P Field mustard cytosol 51.31 50.09
AT5G48385.1 Thale cress cytosol 52.06 49.82
Zm00001d022016_P001 Maize extracellular, plasma membrane 33.33 28.57
Zm00001d006752_P003 Maize nucleus 32.96 26.87
Zm00001d018911_P001 Maize cytosol 27.34 24.05
Zm00001d007835_P002 Maize cytosol, endoplasmic reticulum, nucleus 25.66 23.7
Zm00001d039594_P001 Maize extracellular, plasma membrane 22.1 18.47
CDX86307 Canola nucleus 51.12 18.29
Zm00001d028173_P002 Maize plastid 16.48 17.19
CDX85335 Canola cytosol, endoplasmic reticulum, mitochondrion, plasma membrane 51.31 16.95
Bra037488.1-P Field mustard cytosol 0.19 0.11
Protein Annotations
EnsemblPlants:Zm00001d019890_P001EnsemblPlants:Zm00001d019890_T001EnsemblPlantsGene:Zm00001d019890EntrezGene:103632462GO:GO:0000003GO:GO:0007275
GO:GO:0008150GO:GO:0009791GO:GO:0009908GO:GO:0009987GO:GO:0030154InterPro:Frigida
ncoils:CoilPANTHER:PTHR31791PANTHER:PTHR31791:SF12PFAM:PF07899ProteinID:ONM53848.1SEG:seg
UniParc:UPI0002220BBBUniProt:A0A1D6I0R6MapMan:35.1:::
Description
FRIGIDA-like protein 3
Coordinates
chr7:-:73382731..73404223
Molecular Weight (calculated)
60374.5 Da
IEP (calculated)
6.878
GRAVY (calculated)
-0.455
Length
534 amino acids
Sequence
(BLAST)
001: MSEMESVAAL MDSTSSKIQQ LQEAFAELES QSAFCMNFKW KQLEDHFRGL EQSLKKKFDE LKEQEKEFQE TVAKSEQMLE QREAAVVAKE LTSLERLQEK
101: REAALAMIFS KSRLSLPVPS INPMNKALDN LGVKWPKPAS EESVHLQVDN AAVRPRSELV ALCEEMNVNG LHKFISDNRK NLAAIREEIP SALKKTSHPY
201: GLVLDSLEDF YSGDNLVLDG KKDGDLLGVR RTCLMLMESL GQLHSNDITC SSLERHMLTT NIIERAKTIA FKWKSKLDNL DIDASNGNCL EAHAFLQLLA
301: TFGISAEFNE DDLCKLLPYV SRRRQTPELC RLLGLSQKMP GVIEVLVESG RPIDAINLAY VFELTEQFEP VHLLKAYLRD VKKMSHARNV KTSPGAQNEM
401: NERELSALKS VIKCIEEHKL EQQYPVDPLQ KRVLQLEKAK ADKRMAVEAA KPQSKRPRAN GSAFATRATG FADKSFYSAT PERHPFNPCE RQFVYGAEVH
501: LPPMMTSASY TMQPAHGPYY GNGYPVQYQV SYIH
Best Arabidopsis Sequence Match ( AT5G48385.1 )
(BLAST)
001: MEDTRSVASL MDSTSSKIQQ LQKAFAELES QRAVTLNLKW KELEEHFHGL ERSLKRRFHE LEDQEKEYET KTRKAQELLE KKKAAVEAKE KAALERLQKK
101: RDAAMFTINS ALDKYNNAPV SKPSVGERWP QNAVEDSSNV FAADSITDDN PDGIVQDVQI SPVMGNYEVK AYPQLLKLCG DMDSTGLHKF VSDNRKNLAS
201: LKEEIPMAFR AAANPASLVL DSLEGFYPME APTADGKKDA NLLGMRRTCI MLMECLSILL SGLDRNCLAV VLSQNVKHRA KTIAEGWNPL LESLDMDACN
301: GNSLEAHAFL QLLATFAIVA DFKEDELLKL IPMVSRRRQA AELCRSLGLA EKMPGVIEVL VNSGKQIDAV NLAFAFELTE QFSPVSLLKS YLIEARRSSP
401: QGRPGNASPA VQDEFNEREL IGLKTVIKCI EEHSLEEQYP VEPLHKRILQ LEKAKADKKR ATEPMKPQPK RPRGAQPRVT DNNNNINNNK TGYGRVIPER
501: YPQYVYDNRP FLSGPIMAAQ PPPPPPPQTY TFNPAPAHGN FYANCYQYQA PPPPPYFH
Arabidopsis Description
FRL3FRIGIDA-like protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q67ZB3]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.