Factsheet for Zm00001d022016_P001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, extracellular

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, plasma membrane
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

extracellular: 20408568
plasma membrane: 27341663

msms PMID: 27341663 doi

P Voothuluru, JC Anderson, RE Sharp, SC Peck

Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER99638	Sorghum	cytosol	89.41	90.28
Zm00001d006752_P003	Maize	nucleus	87.16	82.9
Os07t0592300-01	Rice	nucleus	71.75	73.52
HORVU1Hr1G088810.2	Barley	nucleus	66.93	66.93
TraesCS1B01G432600.1	Wheat	nucleus	66.29	65.35
TraesCS1A01G403200.1	Wheat	nucleus	65.97	65.13
TraesCS1D01G411200.1	Wheat	nucleus	65.81	65.08
GSMUA_Achr5P16090_001	Banana	nucleus	46.23	47.37
VIT_07s0129g00610.t01	Wine grape	cytosol	39.49	42.63
KRH04492	Soybean	nucleus	35.15	39.6
KRH58029	Soybean	nucleus	34.19	38.52
Solyc04g008840.2.1	Tomato	nucleus	35.63	36.88
PGSC0003DMT400065090	Potato	nucleus	35.15	36.02
Zm00001d019892_P001	Maize	nucleus	22.47	34.57
Zm00001d005107_P001	Maize	cytosol	29.05	33.9
Zm00001d019890_P001	Maize	nucleus	28.57	33.33
Zm00001d007835_P002	Maize	cytosol, endoplasmic reticulum, nucleus	21.99	23.7
Zm00001d018911_P001	Maize	cytosol	22.79	23.39
Zm00001d039594_P001	Maize	extracellular, plasma membrane	19.1	18.62
Zm00001d028173_P002	Maize	plastid	15.09	18.36

Protein Annotations

EMBL:BT063849	EnsemblPlants:Zm00001d022016_P001	EnsemblPlants:Zm00001d022016_T001	EnsemblPlantsGene:Zm00001d022016	EntrezGene:100274738	GO:GO:0000003
GO:GO:0007275	GO:GO:0008150	GO:GO:0009791	GO:GO:0009908	GO:GO:0009987	GO:GO:0030154
InterPro:Frigida	ncoils:Coil	PANTHER:PTHR31791	PANTHER:PTHR31791:SF4	PFAM:PF07899	ProteinID:ONM59314.1
SEG:seg	UniParc:UPI0001948BAE	UniProt:C0P6D0	MapMan:35.1	:	:

Description

FRIGIDA-like protein 3

Coordinates

chr7:-:168053130..168058705

Molecular Weight (calculated)

67977.2 Da

IEP (calculated)

6.614

GRAVY (calculated)

-0.540

Length

623 amino acids

Sequence
(BLAST)

001: MSTEATLNNS GGSESALLLL EQLAEVFGKL KTHTETFLHL QNGIKWEDIE GHFLSLDESY RSKFDELVEK EKALEEKKAE ACRLIAEKEA KVSTKEHASL
101: NQLQELRDAA VSSLAEVRQK YKVELAEILE ASGSKDKKVS TSINDNNASR ASEENTPASG SGEASEALPV ETKPRPVLKQ LCEQMDTKGL LKFLSENCRK
201: LASFRDELSV ALKCATDPAR FVLNSLEGFF PPDQTNSPGS KHNALEVQRK SCILLMEAIA PALGMKEPGG DDPWSSEIKE QAKEIAEEWK SKLAEIDLDA
301: SNGYSLEAQA FLQLLTTFNV DSVLDEDELC KIVVAVSRRK QTAVSCRSLG LNEKVPGIIE ELVKRHRQID AVHFIQAFGL SETFPPAPLL KTYVEEQKDT
401: IENNGDATAI SLTDDPKSRE LIALRAVIKC IEEHKLQKEC SLGPLQKRVS ELKPKGEKRP SSDAGRTYAK KPRGPGISFP RRPAGSVGSA ARRPPFPGYT
501: WQRAPAPMPS RGPAPVPSRA PLPAPLPDRY GAADRYHYTP PAPAYDSGAF SSYSEPFSAP KPFQYTPGSV AASYNSSPYK VAYGGPGAPV RSTYPGYASA
601: SGPAASSSYA NYMGSVYRPP QQP

Best Arabidopsis Sequence Match ( AT1G31814.1 )
(BLAST)

001: MTAAESIAAS INQIDEKKQK LKKAFDDLQA HRSLLSPSFN LSWSEIDSHF SSLQSSLFNR LQSAVTSSNS GNIETPTAVT TETPVLWPEL RKFCEKNDGK
101: GLGNYMIENS RKRLSINEEL PNAIRCSENP APLVLDAIEG SYHCSSPSSS SSARAIDVKR IFVLLLEALI EINANLTNDL RERARTIAYD WKPNIGNKPS
201: EALGFLHLVA AFELGSLFST EEICDYIFLI SKYKQATTIC KKIGLDRNRI GVLVQKFLDT GRLLVAIRFI YENEMVGEFE PVSILKTSLK NSREAAKRVC
301: AEGNYSLKVQ NEATDKELSA LRAVIKVVKE KNIESEFMEE KLEECVKELE DQKAQRKRAT KFNSPANPQQ PQEQKVDNKR PRVANGSSME YNLTIPPLRP
401: QQQPPLLPTP SQILQVNPYG LLSSILPGVA VPYGNPRALF GSVPAPASRP VFYVQQTGYG MPPPQYRPPY YPQ

Arabidopsis Description

FRL2Inactive FRIGIDA-like protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9C6S2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.