Factsheet for Zm00001d007835_P002

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, nucleus, cytosol

Predictor Summary:

nucleus 1
extracellular 1
endoplasmic reticulum 2
vacuole 1
plasma membrane 1
golgi 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, endoplasmic reticulum, nucleus
Any Predictor:	cytosol, nucleus, secretory
MultiLoc:	nucleus
PProwler:	secretory
WoLF PSORT:	endoplasmic reticulum
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d005107_P001
Zm00001d007835_P002
Zm00001d008345_P003
Zm00001d009837_P001
Zm00001d012238_P003
Zm00001d018911_P001
Zm00001d019890_P001
Zm00001d019892_P001
Zm00001d020008_P001
Zm00001d024393_P001
Zm00001d025652_P005
Zm00001d028569_P002
Zm00001d029487_P001
Zm00001d037122_P009
Zm00001d037596_P001
Zm00001d040274_P001
Zm00001d040789_P001
Zm00001d042042_P001
Zm00001d042641_P001
Zm00001d044979_P010
Zm00001d047834_P004

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G22440.1	Zm00001d012238_P003	AT1G33470.1	21798944
AT3G22440.1	Zm00001d042042_P001	AT1G33470.1	21798944
AT3G22440.1	Zm00001d042641_P001	AT1G33470.1	21798944
AT3G22440.1	Zm00001d020008_P001	AT2G04400.1	15714319
AT3G22440.1	Zm00001d024393_P001	AT2G04400.1	15714319
AT3G22440.1	Zm00001d025652_P005	AT2G04400.1	15714319
AT3G22440.1	Zm00001d008345_P003	AT4G02150.1	21798944
AT3G22440.1	Zm00001d040274_P001	AT4G02150.1	21798944
AT3G22440.1	Zm00001d007835_P002	AT4G14900.1	21798944
AT3G22440.1	Zm00001d018911_P001	AT4G14900.1	21798944
AT4G14900.1	Zm00001d009837_P001	AT2G47700.1	21798944
AT4G14900.1	Zm00001d037596_P001	AT2G47700.1	21798944
AT4G14900.1	Zm00001d040789_P001	AT2G47700.1	21798944
AT4G14900.1	Zm00001d029487_P001	AT3G13990.1	21798944
AT4G14900.1	Zm00001d037122_P009	AT3G13990.1	21798944
AT4G14900.1	Zm00001d044979_P010	AT3G13990.1	21798944
AT4G14900.1	Zm00001d005107_P001	AT5G48385.1	21798944
AT4G14900.1	Zm00001d019890_P001	AT5G48385.1	21798944
AT4G14900.1	Zm00001d019892_P001	AT5G48385.1	21798944
AT4G14900.1	Zm00001d028569_P002	AT5G59210.1	21798944
AT4G14900.1	Zm00001d047834_P004	AT5G59210.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d018911_P001	Maize	cytosol	87.72	83.53
KXG34492	Sorghum	nucleus	87.02	81.39
Os07t0173200-02	Rice	cytosol	74.22	80.34
GSMUA_AchrUn_...	Banana	cytosol, nucleus	23.7	58.55
GSMUA_Achr7P01520_001	Banana	nucleus	49.31	58.4
GSMUA_Achr2P12700_001	Banana	nucleus	49.31	58.28
KRH35520	Soybean	cytosol	44.64	48.68
KRG91301	Soybean	cytosol	44.12	48.66
VIT_05s0020g03470.t01	Wine grape	nucleus	43.77	48.47
PGSC0003DMT400077344	Potato	nucleus	40.31	45.33
Solyc09g076050.2.1	Tomato	nucleus	40.14	45.14
CDY46317	Canola	cytosol, nucleus, plastid	40.66	44.76
CDY34252	Canola	cytosol, nucleus, plastid	39.97	44.25
Bra023825.1-P	Field mustard	cytosol, nucleus, plastid	40.48	43.82
AT3G22440.1	Thale cress	cytosol, nucleus, plastid	40.31	43.8
AT4G14900.1	Thale cress	nucleus	39.97	43.42
CDY38318	Canola	nucleus	31.66	34.46
Zm00001d005107_P001	Maize	cytosol	24.05	26.03
Zm00001d039594_P001	Maize	extracellular, plasma membrane	28.72	25.98
Zm00001d019890_P001	Maize	nucleus	23.7	25.66
Zm00001d019892_P001	Maize	nucleus	17.47	24.94
Zm00001d022016_P001	Maize	extracellular, plasma membrane	23.7	21.99
Zm00001d006752_P003	Maize	nucleus	23.7	20.92
Zm00001d028173_P002	Maize	plastid	17.3	19.53

Protein Annotations

EnsemblPlants:Zm00001d007835_P002	EnsemblPlants:Zm00001d007835_T002	EnsemblPlantsGene:Zm00001d007835	GO:GO:0000003	GO:GO:0007275	GO:GO:0008150
GO:GO:0009791	GO:GO:0009908	GO:GO:0009987	GO:GO:0030154	InterPro:Frigida	ncoils:Coil
PANTHER:PTHR31791	PANTHER:PTHR31791:SF11	PFAM:PF07899	ProteinID:ONM27708.1	SEG:seg	UniParc:UPI0002216E46
UniProt:A0A1D6F978	MapMan:35.1	:	:	:	:

Description

FRIGIDA-like protein 4a

Coordinates

chr2:+:240560724..240564186

Molecular Weight (calculated)

61330.5 Da

IEP (calculated)

8.914

GRAVY (calculated)

-0.360

Length

578 amino acids

Sequence
(BLAST)

001: MASAAAAAVA PAAEEKKGAG GPVTGDMVSA GFAELERQQR LLATCTRLYQ HLSDHIGSLE RGLAARSDAL RVRRRAFDAR THRALDSLHR REASIDASVS
101: RALDHLHSIS AKGSPPAPDP AHAAGAGAAE GLRALCARMD SAAFLGFVVA RRKEADALRA EMPAALKLCV DPAKFVMDAV ADVFPVDRRE ARSPADLAWA
201: CVLILEAAVP ALADPDPDIG PARPLVPRAA RERARGMARE WKDAAEKKGG VEGAKPPDAH AFLQHVATFA VAEKEDMPLY RRIVVSFSWR RQMPRLALTL
301: GLEEEMADII EELIAKRQQL DAVNFAYEAG LQEKFPPVPL LKSYLEDSKK TSTAASDNSS TSSSGQSGSN ANKKEQSALR AVIKCVEDRN LEAEFPLEGL
401: RKQLEELEKA KTEKKKAASS ATSGGSSSGP ATKRIRASNG GPMPPAKAGR LATNACASSF PGPTTFTQSP SHAPHANTSS PSHASHAATA SPSHTSYATP
501: PPYPVGHGLY CSRSPPVIRG EPYAYPPAEE VVGFNVGITM PYSTPPMSYP PAPYGGYGSG MAAYANGMAP AFHQAYYR

Best Arabidopsis Sequence Match ( AT3G22440.1 )
(BLAST)

001: MGSVPDPGEL TELAQPSFEE FQKQTSLMTS CTLLWQELSD HFTSLEQNLM KKSEALKQMI ETLDNQTQTS LESLKRREVT IDHSVEIVAG KVGERARAAL
101: ESLEKARDGC GDGSNDDSGD VDDEEGLLSA LKSLCLKMDA RGFWNFVTAR KKELENLRSK IPAALVDCVD PAMLVLEAIS EVFPVDTRGD KVSNDYGWAC
201: VVILESLTPV IVDPVIGKSR LLVTPSVKEK AKEIAETWKK SLEERGRIEN VKTPDVHTFL QHLVTFGIVK SEDLALYRKL VVGSAWRKQM PKLAVSVGLG
301: DQMPDMIEEL ISRGQQLDAV HFTYEVGLVD KFPPVPLLKA YLRDAKKSAA SIMEDSSNTG RATHLVARKE QSALKAVLKC IEEYKLEEEF PPENLKKRLD
401: QLEKTKTEKR KPAAVPANKR TRASYNGPMP PAKAGRITNA YVSSFPFIRS PSHSPQYASP AAYPSPPTTV YSNRSPPYPY SPEIIPGSYQ GSPIGYPAYN
501: GYCNGPVPAP APPVYHPHHH QHHQFHHQQH YY

Arabidopsis Description

FRL4AFRIGIDA-like protein 4a [Source:UniProtKB/Swiss-Prot;Acc:Q9LUV4]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.