Factsheet for Zm00001d019892_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d007835_P002
Zm00001d009716_P001
Zm00001d011373_P002
Zm00001d014756_P006
Zm00001d016081_P002
Zm00001d018911_P001
Zm00001d021067_P001
Zm00001d023732_P002
Zm00001d029487_P001
Zm00001d037122_P009
Zm00001d044191_P004
Zm00001d044979_P010
Zm00001d046072_P001
Zm00001d053382_P002

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G48385.1	Zm00001d009716_P001	AT1G01440.1	21798944
AT5G48385.1	Zm00001d011373_P002	AT1G01440.1	21798944
AT5G48385.1	Zm00001d016081_P002	AT1G01440.1	21798944
AT5G48385.1	Zm00001d044191_P004	AT1G01440.1	21798944
AT5G48385.1	Zm00001d046072_P001	AT1G01440.1	21798944
AT5G48385.1	Zm00001d053382_P002	AT1G01440.1	21798944
AT5G48385.1	Zm00001d014756_P006	AT1G15570.1	21798944
AT5G48385.1	Zm00001d023732_P002	AT1G15570.1	21798944
AT5G48385.1	Zm00001d021067_P001	AT3G08530.1	21798944
AT5G48385.1	Zm00001d029487_P001	AT3G13990.1	21798944
AT5G48385.1	Zm00001d037122_P009	AT3G13990.1	21798944
AT5G48385.1	Zm00001d044979_P010	AT3G13990.1	21798944
AT5G48385.1	Zm00001d007835_P002	AT3G22440.1	21798944
AT5G48385.1	Zm00001d018911_P001	AT3G22440.1	21798944
AT5G48385.1	Zm00001d007835_P002	AT4G14900.1	21798944
AT5G48385.1	Zm00001d018911_P001	AT4G14900.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d019890_P001	Maize	nucleus	99.26	75.28
Zm00001d005107_P001	Maize	cytosol	92.1	69.85
EES02294	Sorghum	nucleus	91.85	69.4
HORVU5Hr1G051330.1	Barley	cytosol	80.25	60.3
TraesCS5A01G168100.1	Wheat	cytosol	79.26	59.55
TraesCS5B01G164900.2	Wheat	cytosol	80.25	58.66
TraesCS5D01G172300.2	Wheat	cytosol	80.0	58.48
Os09t0248300-01	Rice	cytosol	73.83	55.17
Os09t0248200-01	Rice	cytosol	72.84	54.13
GSMUA_Achr8P29000_001	Banana	nucleus	57.53	43.15
GSMUA_Achr9P08130_001	Banana	cytosol	57.04	42.78
GSMUA_Achr3P16830_001	Banana	endoplasmic reticulum, golgi	58.27	40.14
CDY48750	Canola	cytosol	51.85	39.85
KRH66282	Soybean	cytosol	53.58	39.74
KRH66280	Soybean	cytosol	53.33	39.71
Bra020704.1-P	Field mustard	cytosol	50.86	39.69
PGSC0003DMT400071153	Potato	nucleus	53.33	39.63
Solyc06g082930.2.1	Tomato	nucleus	52.1	39.44
VIT_07s0151g00650.t01	Wine grape	endoplasmic reticulum, extracellular	54.81	39.43
Bra036176.1-P	Field mustard	cytosol	50.62	39.42
KRH07289	Soybean	cytosol	53.09	39.38
PGSC0003DMT400053214	Potato	cytosol	53.09	39.38
Solyc06g007640.2.1	Tomato	nucleus	52.1	39.37
CDY05684	Canola	cytosol	50.12	39.27
CDY00066	Canola	cytosol	51.6	39.14
Bra037489.1-P	Field mustard	cytosol	51.6	38.21
AT5G48385.1	Thale cress	cytosol	52.35	37.99
CDY00062	Canola	cytosol, mitochondrion, nucleus, plastid	12.35	23.47
Zm00001d022016_P001	Maize	extracellular, plasma membrane	34.57	22.47
Zm00001d006752_P003	Maize	nucleus	34.32	21.22
GSMUA_Achr2P05710_001	Banana	nucleus	10.12	21.13
Zm00001d007835_P002	Maize	cytosol, endoplasmic reticulum, nucleus	24.94	17.47
Zm00001d018911_P001	Maize	cytosol	26.17	17.46
CDX86307	Canola	nucleus	51.6	14.0
Zm00001d039594_P001	Maize	extracellular, plasma membrane	21.73	13.77
CDX85335	Canola	cytosol, endoplasmic reticulum, mitochondrion, plasma membrane	51.85	12.99
Zm00001d028173_P002	Maize	plastid	14.57	11.52
Bra037488.1-P	Field mustard	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:Zm00001d019892_P001	EnsemblPlants:Zm00001d019892_T001	EnsemblPlantsGene:Zm00001d019892	GO:GO:0000003	GO:GO:0007275	GO:GO:0008150
GO:GO:0009791	GO:GO:0009908	GO:GO:0009987	GO:GO:0030154	InterPro:Frigida	ncoils:Coil
PANTHER:PTHR31791	PANTHER:PTHR31791:SF12	PFAM:PF07899	ProteinID:ONM53849.1	ProteinID:ONM53850.1	SEG:seg
UniParc:UPI0008459C89	UniProt:A0A1D6I0R8	MapMan:35.1	:	:	:

Description

FRIGIDA-like protein 3

Coordinates

chr7:-:73398915..73404135

Molecular Weight (calculated)

45721.1 Da

IEP (calculated)

6.084

GRAVY (calculated)

-0.357

Length

405 amino acids

Sequence
(BLAST)

001: MSEMESVAAL MDSTSSKIQQ LQEAFAELES QSAFCMNFKW KQLEDHFRGL EQSLKKKFDE LKEQEKEFQE TVAKSEQMLE QREAAVVAKE LTSLERLQEK
101: REAALAMIFS KSRLSLPVPS INPMNKALDN LGVKWPKPAS EESVHLQVDN AAVRPRSELV ALCEEMNVNG LHKFISDNRK NLAAIREEIP SALKKTSHPY
201: GLVLDSLEDF YSGDNLVLDG KKDGDLLGVR RTCLMLMESL GQLHSNDITC SSLERHMLTT NIIERAKTIA FKWKSKLDNL DIDASNGNCL EAHAFLQLLA
301: TFGISAEFNE DDLCKLLPYV SRRRQTPELC RLLGLSQKMP GVIEVLVESG RPIDAINLAY VFELTEQFEP VHLLKAYLRD VKKMSHARNV KTSPGAQNFK
401: NCPCT

Best Arabidopsis Sequence Match ( AT5G48385.1 )
(BLAST)

001: MEDTRSVASL MDSTSSKIQQ LQKAFAELES QRAVTLNLKW KELEEHFHGL ERSLKRRFHE LEDQEKEYET KTRKAQELLE KKKAAVEAKE KAALERLQKK
101: RDAAMFTINS ALDKYNNAPV SKPSVGERWP QNAVEDSSNV FAADSITDDN PDGIVQDVQI SPVMGNYEVK AYPQLLKLCG DMDSTGLHKF VSDNRKNLAS
201: LKEEIPMAFR AAANPASLVL DSLEGFYPME APTADGKKDA NLLGMRRTCI MLMECLSILL SGLDRNCLAV VLSQNVKHRA KTIAEGWNPL LESLDMDACN
301: GNSLEAHAFL QLLATFAIVA DFKEDELLKL IPMVSRRRQA AELCRSLGLA EKMPGVIEVL VNSGKQIDAV NLAFAFELTE QFSPVSLLKS YLIEARRSSP
401: QGRPGNASPA VQDEFNEREL IGLKTVIKCI EEHSLEEQYP VEPLHKRILQ LEKAKADKKR ATEPMKPQPK RPRGAQPRVT DNNNNINNNK TGYGRVIPER
501: YPQYVYDNRP FLSGPIMAAQ PPPPPPPQTY TFNPAPAHGN FYANCYQYQA PPPPPYFH

Arabidopsis Description

FRL3FRIGIDA-like protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q67ZB3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.