Factsheet for Bra020704.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra016654.1-P
Bra021524.1-P
Bra023825.1-P
Bra026120.1-P
Bra026756.1-P
Bra027380.1-P
Bra033264.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G48385.1	Bra033264.1-P	AT1G01440.1	21798944
AT5G48385.1	Bra016654.1-P	AT1G15570.1	21798944
AT5G48385.1	Bra026120.1-P	AT1G15570.1	21798944
AT5G48385.1	Bra026756.1-P	AT1G15570.1	21798944
AT5G48385.1	Bra021524.1-P	AT3G13990.1	21798944
AT5G48385.1	Bra027380.1-P	AT3G13990.1	21798944
AT5G48385.1	Bra023825.1-P	AT3G22440.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY05684	Canola	cytosol	94.99	95.36
CDY48750	Canola	cytosol	96.34	94.88
Bra037489.1-P	Field mustard	cytosol	89.21	84.64
Bra036176.1-P	Field mustard	cytosol	83.62	83.46
AT5G48385.1	Thale cress	cytosol	85.55	79.57
KRH66282	Soybean	cytosol	63.78	60.62
KRH07289	Soybean	cytosol	63.39	60.26
KRH66280	Soybean	cytosol	62.81	59.93
PGSC0003DMT400071153	Potato	nucleus	61.66	58.72
VIT_07s0151g00650.t01	Wine grape	endoplasmic reticulum, extracellular	63.01	58.08
PGSC0003DMT400053214	Potato	cytosol	61.08	58.06
Solyc06g082930.2.1	Tomato	nucleus	59.73	57.94
Solyc06g007640.2.1	Tomato	nucleus	59.54	57.65
GSMUA_Achr2P05710_001	Banana	nucleus	19.85	53.09
GSMUA_Achr8P29000_001	Banana	nucleus	55.11	52.96
TraesCS5A01G168100.1	Wheat	cytosol	54.14	52.13
GSMUA_Achr9P08130_001	Banana	cytosol	54.14	52.04
HORVU5Hr1G051330.1	Barley	cytosol	53.95	51.95
TraesCS5D01G172300.2	Wheat	cytosol	54.53	51.08
Zm00001d019892_P001	Maize	nucleus	39.69	50.86
EES02294	Sorghum	nucleus	52.22	50.56
TraesCS5B01G164900.2	Wheat	cytosol	53.95	50.54
Zm00001d019890_P001	Maize	nucleus	51.83	50.37
Zm00001d005107_P001	Maize	cytosol	51.25	49.81
Os09t0248300-01	Rice	cytosol	51.06	48.89
Os09t0248200-01	Rice	cytosol	50.29	47.89
GSMUA_Achr3P16830_001	Banana	endoplasmic reticulum, golgi	53.76	47.45
Bra023825.1-P	Field mustard	cytosol, nucleus, plastid	27.94	27.15
Bra008624.1-P	Field mustard	cytosol	23.31	26.83
Bra023207.1-P	Field mustard	cytosol	23.7	26.68
Bra035723.1-P	Field mustard	plastid	14.07	19.95
Bra029192.1-P	Field mustard	nucleus, plastid	19.46	17.21
Bra036105.1-P	Field mustard	nucleus	20.23	12.59
Bra009973.1-P	Field mustard	cytosol	20.81	12.43
Bra037488.1-P	Field mustard	cytosol	0.39	0.21

Protein Annotations

EnsemblPlants:Bra020704.1	EnsemblPlants:Bra020704.1-P	EnsemblPlantsGene:Bra020704	GO:GO:0000003	GO:GO:0007275	GO:GO:0008150
GO:GO:0009791	GO:GO:0009908	GO:GO:0009987	GO:GO:0030154	InterPro:Frigida	ncoils:Coil
PANTHER:PTHR31791	PANTHER:PTHR31791:SF12	PFAM:PF07899	SEG:seg	UniParc:UPI0002546317	UniProt:M4DW10
MapMan:35.1	:	:	:	:	:

Description

AT5G48385 (E=4e-214) | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Frigida-like (InterPro:IPR012474); BEST Arabidopsis thaliana protein match is: hydroxyproline-rich glycoprotein family protein (TAIR:AT3G22440.1); Has 987 Blast hits to 921 proteins in 78 species: Archae - 0; Bacteria - 16; Metazoa - 58; Fungi - 7; Plants - 873; Viruses - 0; Other Eukaryotes - 33 (source: NCBI BLink).

Coordinates

chrA02:+:23654073..23656362

Molecular Weight (calculated)

57870.8 Da

IEP (calculated)

6.346

GRAVY (calculated)

-0.521

Length

519 amino acids

Sequence
(BLAST)

001: MEDTRSVASL MDSTSSKIQQ LQKAFAELES QRAVTFNLKW NELEEHFHGL ERSLKRRFHE LEDQEKEYET KTRKAQELLE KKKAAVEAKE KASLERLQKK
101: RDAAVFAINT ALDKYNNNNA PNISAKAFAA EDENLDGTVQ DAEISPVKAY PELVKLCEDM DSAGLHKFVS DNRKNLALLK EEIPVALKAA ANPASLVLDS
201: LEGFYPTTSD GKKDANLLGM RRTCIMLMEC LSVLLSGLDS NSLVAVLSES VKDRAKGVAD GWSQLLESLD MDGGNGNSLE AHAFLQLLAT FCIVSDFKED
301: GILKLIPMVS RRRQAAELCR SLGLSEKMPG VIEVLVNSGK QIDAVNLAFA FGLTEKFPPV ELLKCYLTEA SRSSSQGNAS PADEFSEREL TGLKAVIKCV
401: EEHNLEEQYP VEPLHKRILQ LEKTKAEKKR ATEPTKPQTK RPRGPQPRVT DNNNNKTGYG RVIPERYPQY VYDNRQFLSG PIMAAQAPPP PQTYTFSPAA
501: AQGNFYGNCY QYQAPPYFH

Best Arabidopsis Sequence Match ( AT5G48385.1 )
(BLAST)

001: MEDTRSVASL MDSTSSKIQQ LQKAFAELES QRAVTLNLKW KELEEHFHGL ERSLKRRFHE LEDQEKEYET KTRKAQELLE KKKAAVEAKE KAALERLQKK
101: RDAAMFTINS ALDKYNNAPV SKPSVGERWP QNAVEDSSNV FAADSITDDN PDGIVQDVQI SPVMGNYEVK AYPQLLKLCG DMDSTGLHKF VSDNRKNLAS
201: LKEEIPMAFR AAANPASLVL DSLEGFYPME APTADGKKDA NLLGMRRTCI MLMECLSILL SGLDRNCLAV VLSQNVKHRA KTIAEGWNPL LESLDMDACN
301: GNSLEAHAFL QLLATFAIVA DFKEDELLKL IPMVSRRRQA AELCRSLGLA EKMPGVIEVL VNSGKQIDAV NLAFAFELTE QFSPVSLLKS YLIEARRSSP
401: QGRPGNASPA VQDEFNEREL IGLKTVIKCI EEHSLEEQYP VEPLHKRILQ LEKAKADKKR ATEPMKPQPK RPRGAQPRVT DNNNNINNNK TGYGRVIPER
501: YPQYVYDNRP FLSGPIMAAQ PPPPPPPQTY TFNPAPAHGN FYANCYQYQA PPPPPYFH

Arabidopsis Description

FRL3FRIGIDA-like protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q67ZB3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.