Factsheet for Bra026756.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
nucleus 4
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra001929.1-P
Bra006369.1-P
Bra006381.1-P
Bra008581.1-P
Bra012650.1-P
Bra013872.1-P
Bra014835.1-P
Bra017408.1-P
Bra018036.1-P
Bra018081.1-P
Bra027683.1-P
Bra028351.1-P
Bra028357.1-P
Bra028380.1-P
Bra029917.1-P
Bra032422.1-P
Bra033769.1-P
Bra039199.1-P	nucleus

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G15570.1	Bra028380.1-P	AT1G61870.1	20706207
AT1G15570.1	Bra027683.1-P	AT1G64180.1	21798944
AT1G15570.1	Bra039199.1-P	AT2G23430.1	20018602
AT1G15570.1	Bra006369.1-P	AT3G11270.1	20706207
AT1G15570.1	Bra017408.1-P	AT3G11270.1	20706207
AT1G15570.1	Bra032422.1-P	AT3G11270.1	20706207
AT1G15570.1	Bra001929.1-P	AT3G24140.1	21798944
AT1G15570.1	Bra028351.1-P	AT3G24140.1	21798944
AT1G15570.1	Bra028357.1-P	AT3G24140.1	21798944
AT1G15570.1	Bra018081.1-P	AT3G48150.1	21798944
AT1G15570.1	Bra033769.1-P	AT3G48150.1	21798944
AT1G15570.1	Bra018036.1-P	AT3G48750.1	16415207
AT1G15570.1	Bra029917.1-P	AT3G48750.1	16415207
AT1G15570.1	Bra014835.1-P	AT3G54180.1	20706207
AT1G15570.1	Bra012650.1-P	AT4G17680.1	21798944
AT1G15570.1	Bra013872.1-P	AT4G25200.1	21798944
AT1G15570.1	Bra006381.1-P	AT5G16970.1	20706207
AT1G15570.1	Bra008581.1-P	AT5G16970.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY53304	Canola	plastid	97.31	97.31
CDX81722	Canola	nucleus, plastid	93.89	95.29
Bra016654.1-P	Field mustard	nucleus, plastid	82.4	75.73
Bra026120.1-P	Field mustard	nucleus	85.33	74.89
AT1G15570.1	Thale cress	nucleus, plastid	79.46	72.22
Bra000822.1-P	Field mustard	nucleus	63.08	68.44
Bra031463.1-P	Field mustard	nucleus	61.12	67.75
Bra003563.1-P	Field mustard	plastid	67.73	64.12
GSMUA_Achr1P14000_001	Banana	nucleus, plasma membrane, plastid	38.39	63.56
Bra008477.1-P	Field mustard	plastid	68.22	61.05
Bra035186.1-P	Field mustard	plastid	67.73	59.96
VIT_09s0002g05240.t01	Wine grape	nucleus	62.1	51.84
KRH47513	Soybean	nucleus	57.46	49.37
Solyc03g120440.1.1	Tomato	nucleus, plastid	53.06	47.38
KRH44391	Soybean	nucleus	54.28	47.13
PGSC0003DMT400006576	Potato	nucleus	53.06	46.87
Bra008973.1-P	Field mustard	nucleus, plastid	48.66	45.54
Bra033658.1-P	Field mustard	nucleus	39.61	45.51
Bra040710.1-P	Field mustard	nucleus	39.85	43.94
Bra032220.1-P	Field mustard	nucleus	38.14	43.7
Bra040792.1-P	Field mustard	nucleus, plastid	38.88	43.68
Os12t0502300-01	Rice	nucleus, plastid	51.34	42.86
Bra040793.1-P	Field mustard	nucleus	37.65	42.42
OQU77084	Sorghum	nucleus	50.61	42.42
Bra040753.1-P	Field mustard	nucleus, plastid	37.41	42.15
Bra015671.1-P	Field mustard	plastid	38.88	41.19
TraesCSU01G054300.1	Wheat	nucleus	50.37	41.12
TraesCS3D01G529100.1	Wheat	plastid	50.37	40.79
TraesCS3A01G523600.1	Wheat	plastid	50.37	40.63
HORVU3Hr1G114440.21	Barley	nucleus, plastid	50.12	40.43
KXG23504	Sorghum	mitochondrion, nucleus	47.43	40.17
GSMUA_Achr3P25340_001	Banana	nucleus	53.06	40.04
TraesCS5D01G121100.2	Wheat	plastid	49.39	39.76
TraesCS5B01G114300.2	Wheat	plastid	49.14	39.65
Bra023606.1-P	Field mustard	plastid	40.59	39.62
Zm00001d014756_P006	Maize	nucleus, plastid	50.37	39.54
Zm00001d023732_P002	Maize	mitochondrion, nucleus, plastid	46.7	39.38
TraesCS5A01G108500.2	Wheat	plastid	48.9	39.37
Bra032202.1-P	Field mustard	plastid	38.63	37.44
Bra022173.1-P	Field mustard	nucleus, plastid	34.47	37.4
Bra024504.1-P	Field mustard	nucleus	30.07	29.36
Bra037265.1-P	Field mustard	nucleus	29.1	29.1
Bra017726.1-P	Field mustard	nucleus	28.61	28.82
Bra025831.1-P	Field mustard	nucleus	28.85	28.78
Bra016460.1-P	Field mustard	nucleus	28.61	28.54
Bra002046.1-P	Field mustard	nucleus	26.65	27.74
Bra003727.1-P	Field mustard	nucleus	25.43	27.15
Bra015762.1-P	Field mustard	nucleus	28.61	27.15
Bra005880.1-P	Field mustard	nucleus, plastid	27.14	26.81
Bra028741.1-P	Field mustard	nucleus	27.14	26.75
Bra011769.1-P	Field mustard	nucleus	27.14	25.93
Bra026065.1-P	Field mustard	nucleus	25.18	20.36
Bra036544.1-P	Field mustard	nucleus	47.92	19.86
Bra016640.1-P	Field mustard	nucleus	26.16	16.34

Protein Annotations

Gene3D:1.10.472.10	MapMan:13.1.1.1.1	EnsemblPlantsGene:Bra026756	EnsemblPlants:Bra026756.1	EnsemblPlants:Bra026756.1-P	InterPro:Cyclin-like
InterPro:Cyclin-like_sf	InterPro:Cyclin_C-dom	InterPro:Cyclin_N	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	UniProt:M4ED96	PFAM:PF00134	PFAM:PF02984	PIRSF:PIRSF001771	PANTHER:PTHR10177
PANTHER:PTHR10177:SF346	SMART:SM00385	SMART:SM01332	SUPFAM:SSF47954	UniParc:UPI0002542CBA	SEG:seg

Description

AT1G15570 (E=2e-138) CYCA2;3 | CYCA2;3 (CYCLIN A2;3); cyclin-dependent protein kinase regulator

Coordinates

chrA09:-:33556505..33558176

Molecular Weight (calculated)

46705.1 Da

IEP (calculated)

8.769

GRAVY (calculated)

-0.336

Length

409 amino acids

Sequence
(BLAST)

001: MVQENAVSRP FTRAFASSLR ASTTHNQQRA NRKRPASEED KKNITAPTPN KKKKRVVLGD ISNVGFNAAK LEAKNIIKQV KKESVDTSEV TDLQSKTHAK
101: AEGVSNDTAD NCKSDVIGTS TSLGIPKVIN IDSDDKDPLL CCLYAPEIYH NLRVSELKRR PVPDFMEKTQ KDVTHSMRGI LVDWLVEVSE EYTLVPDTLY
201: LTVYLIDWFL HGNHIERQNL QLLGITCMLI ASKYEEICAP RVEEFCLMTD NTYTREQVLE MENQVLAHFS FQIYTPTPKT FLRRFLRAAA QASSYLSQRR
301: RELEFLASYL TELTLLDYRF LKFLPSVIAA SAVFLAKWTL DQSNHPWNLT LEHYTTYKAS DLKASVHALQ DLQLNTRGCP LSAIRMKYRQ EKFKSVAVLI
401: SPKLLDTLF

Best Arabidopsis Sequence Match ( AT1G15570.1 )
(BLAST)

001: MGKENAVSRP FTRSLASALR ASEVTSTTQN QQRVNTKRPA LEDTRATGPN KRKKRAVLGE ITNVNSNTAI LEAKNSKQIK KGRGHGLAST SQLATSVTSE
101: VTDLQSRTDA KVEVASNTAG NLSVSKGTDN TADNCIEIWN SRLPPRPLGR SASTAEKSAV IGSSTVPDIP KFVDIDSDDK DPLLCCLYAP EIHYNLRVSE
201: LKRRPLPDFM ERIQKDVTQS MRGILVDWLV EVSEEYTLAS DTLYLTVYLI DWFLHGNYVQ RQQLQLLGIT CMLIASKYEE ISAPRIEEFC FITDNTYTRD
301: QVLEMENQVL KHFSFQIYTP TPKTFLRRFL RAAQASRLSP SLEVEFLASY LTELTLIDYH FLKFLPSVVA ASAVFLAKWT MDQSNHPWNP TLEHYTTYKA
401: SDLKASVHAL QDLQLNTKGC PLSAIRMKYR QEKYKSVAVL TSPKLLDTLF

Arabidopsis Description

CYCA2-3CYCA2 [Source:UniProtKB/TrEMBL;Acc:A0A178WNJ4]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.