Factsheet for Bra027683.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra007884.1-P
Bra016263.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G64180.1	Bra007884.1-P	AT1G69810.1	21798944
AT1G64180.1	Bra016263.1-P	AT1G69810.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY34403	Canola	nucleus	97.05	97.22
CDY25566	Canola	nucleus	94.1	93.61
AT1G64180.1	Thale cress	nucleus	74.65	72.51
Bra025484.1-P	Field mustard	nucleus	58.33	56.47
KRH77618	Soybean	nucleus	48.96	42.34
KRH27868	Soybean	nucleus	47.4	40.81
VIT_02s0025g00840.t01	Wine grape	nucleus	47.22	39.94
Solyc08g081830.2.1	Tomato	nucleus, plastid	43.06	36.58
PGSC0003DMT400032084	Potato	nucleus	42.71	36.28
Bra004552.1-P	Field mustard	nucleus	23.26	32.52
GSMUA_Achr10P...	Banana	nucleus	36.63	31.31
Os02t0260500-00	Rice	nucleus	25.87	29.98
GSMUA_Achr10P...	Banana	nucleus	34.03	29.74
Zm00001d053356_P002	Maize	nucleus	29.17	26.5
KXG29970	Sorghum	nucleus	31.94	26.29
OQU76466	Sorghum	nucleus	32.29	26.09
Zm00001d037050_P001	Maize	nucleus	29.17	25.38
TraesCS7A01G344200.1	Wheat	nucleus	31.08	23.87
TraesCS7D01G335400.1	Wheat	nucleus	30.73	23.79
TraesCS7B01G238900.1	Wheat	nucleus	30.21	23.2
Bra006620.1-P	Field mustard	nucleus	16.84	21.51
Bra001412.1-P	Field mustard	nucleus	12.85	21.33
HORVU7Hr1G080670.9	Barley	nucleus, plastid	30.73	21.05
Bra034827.1-P	Field mustard	plastid	20.66	19.38
Bra002404.1-P	Field mustard	nucleus	16.15	19.21
Os06t0507900-01	Rice	cytosol, nucleus	10.59	18.54
Bra018866.1-P	Field mustard	nucleus	18.06	15.45
Bra035788.1-P	Field mustard	mitochondrion	15.62	14.13

Protein Annotations

EnsemblPlants:Bra027683.1	EnsemblPlants:Bra027683.1-P	EnsemblPlantsGene:Bra027683	GO:GO:0005575	GO:GO:0005623	GO:GO:0005886
GO:GO:0009506	GO:GO:0016020	ncoils:Coil	PANTHER:PTHR31071	PANTHER:PTHR31071:SF9	SEG:seg
UniParc:UPI0002542388	UniProt:M4EFX0	MapMan:35.1	:	:	:

Description

AT1G64180 (E=6e-159) | intracellular protein transport protein USO1-related

Coordinates

chrA09:-:6946168..6948359

Molecular Weight (calculated)

65607.3 Da

IEP (calculated)

9.651

GRAVY (calculated)

-1.016

Length

576 amino acids

Sequence
(BLAST)

001: MKSKEEEEEE EDGGEGQKGK SFIEKLRRRA VSVGHRRVFR SPSTPAHISF NPNNSSSSKF ASSSRKLAGS LWEFYQYYDQ DHEIPPLAKM HRAPYSSGGD
101: PSNRRLRHGH GKTAVRDNGA LDLTDDQPES AGSIRKQIGQ MLMKHHQLTQ RNDHPLQPLS PASSLEVAPY KGAITPGSSL DLHGRRRAGE PNYNNLKTST
201: ELLKVLNRIW TLEEQHSANI SLIKALKSEL AHARARIKEL LRCQQADRRE MDDLVKQLAE EKLSKDTKER DRLSSAVQQL EEERKLRRRS ESLQRKLARE
301: LSEVKSTLSH CVDEMERGSK SKKMLERLCD EFARGIKSYE REVHGLKQKV DKSWEGWGEE DQMVLCIAET WLDERIQSAE VGSVLEKLAL EIEAFLESKQ
401: KLSGNEVPKN RRSSLESAPF NAMSAPIQEV DSQEEEDSNC FELKKHGTVE TRRSQSPSSL QVKFEDQMAW AMSNNEKKSK KKSRDIEAEK GEKERSNAVG
501: EMIRTHRRLL SETQGIDEGS CSYQPSRRAE SPIRHWNPRA MTSDLTAQGV KDNTLKAKLS EARTKSSRPR IRLFKG

Best Arabidopsis Sequence Match ( AT1G64180.1 )
(BLAST)

001: MKSKEEEEEE EEEDDGGEGQ KGKRFIEKLR RRAVFVGHRS VFRRPSTPVH ISFNPNKNPS SASSRKLAAS LWEFYQYYDN DHLIHPPAAT KMHRAPLGSA
101: GPSNSRRLRH GHGKAAVADN NGIELTDHQP ESAGSIRRQI GQMLMKHHHL TERNDHALQP VSPTSYDSSL EFRGRRRAGE PNNNIKTSTE LLKVLNRIWI
201: LEEQHSANIS LIKSLKTELA HSRARIKDLL RCKQADKRDM DDFVKQLAEE KLSKGTKEHD RLSSAVQSLE DERKLRKRSE SLYRKLAQEL SEVKSTLSNC
301: VKEMERGTES KKILERLCDE FAKGIKSYER EIHGLKQKLD KNWKGWDEQD HMILCIAESW LDERIQSGNG SALEKLEFEI ETFLKTNQNA DSNEIARNRR
401: TSLESVPFNA MSAPIWEVDR EEEEDSGGSG SNCFELKKHG SDVAKPPRGD ETEKPELIKV GVSERPQRRS QSPSSLQVKF EDQMAWAMSS NEKKKTRANE
501: MEPETEKCGK ETNNVVGEMI RTHRRLSSET REIDEASCSY PSRRRESPIR QWNTRTVTPD LGAPRGVKDN TLKTKLSEAR TTSSRPRVRL FKD

Arabidopsis Description

Intracellular protein transport protein USO1-like protein [Source:UniProtKB/TrEMBL;Acc:F4I5B1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.