Factsheet for Bra016263.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra001585.1-P
Bra007884.1-P
Bra010220.1-P
Bra016263.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G69810.1	Bra007884.1-P	AT1G69810.1	21798944
AT1G69810.1	Bra016263.1-P	AT1G69810.1	21798944
AT1G69810.1	Bra010220.1-P	AT2G25000.1	21798944
AT1G69810.1	Bra001585.1-P	AT3G15160.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY11652	Canola	nucleus	38.64	75.46
Bra007884.1-P	Field mustard	nucleus	31.68	61.88
AT1G69810.1	Thale cress	nucleus	29.14	56.33
Bra019123.1-P	Field mustard	nucleus	7.89	30.41
Bra025693.1-P	Field mustard	nucleus	11.23	29.27
Bra031053.1-P	Field mustard	nucleus	17.65	28.09
Bra016535.1-P	Field mustard	nucleus	17.65	27.85
Bra023505.1-P	Field mustard	nucleus	18.98	27.52
Bra006283.1-P	Field mustard	nucleus	18.85	26.76
Bra008719.1-P	Field mustard	nucleus	19.39	26.32
Bra040505.1-P	Field mustard	nucleus	17.65	24.67
Bra036315.1-P	Field mustard	nucleus	15.64	23.88
Bra004285.1-P	Field mustard	nucleus	10.43	23.78
Bra008435.1-P	Field mustard	nucleus	8.56	22.07
Bra013584.1-P	Field mustard	nucleus	15.78	21.93
Bra029491.1-P	Field mustard	nucleus	14.17	21.54
Bra035148.1-P	Field mustard	nucleus	8.56	21.33
Bra003588.1-P	Field mustard	nucleus	8.42	21.21
Bra000793.1-P	Field mustard	nucleus	14.71	21.19
Bra027057.1-P	Field mustard	nucleus	15.51	21.01
Bra010220.1-P	Field mustard	nucleus	8.02	19.48
Bra011299.1-P	Field mustard	nucleus	8.16	19.24
Bra034482.1-P	Field mustard	nucleus	12.43	18.34
Bra023983.1-P	Field mustard	nucleus	8.42	18.26
Bra025692.1-P	Field mustard	nucleus	3.88	12.03

Protein Annotations

MapMan:15.5.22	MapMan:18.4.5.1.3	Gene3D:2.20.25.80	MapMan:27.3.1.3	Gene3D:3.10.580.10	EnsemblPlantsGene:Bra016263
EnsemblPlants:Bra016263.1	EnsemblPlants:Bra016263.1-P	InterPro:CBS_dom	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0043565	InterPro:IPR000644	InterPro:IPR003657	InterPro:IPR036576	UniProt:M4DID6
PFAM:PF00571	PFAM:PF03106	PFscan:PS50811	PFscan:PS51371	PANTHER:PTHR13780	PANTHER:PTHR13780:SF47
SMART:SM00116	SMART:SM00774	SUPFAM:SSF118290	SUPFAM:SSF54631	UniParc:UPI00025418B1	InterPro:WRKY_dom
InterPro:WRKY_dom_sf	SEG:seg	:	:	:	:

Description

AT1G69800 (E=3e-185) | CBS domain-containing protein

Coordinates

chrA07:-:18563900..18567514

Molecular Weight (calculated)

81014.6 Da

IEP (calculated)

6.055

GRAVY (calculated)

-0.232

Length

748 amino acids

Sequence
(BLAST)

001: MHVSNVIRPQ HEDSMEMDTN SHDNFGVDIS LRLGRSDLNV SKNVDEIDKI SLDKISDEIS EGSDKKRSAL GLGFRIQSCE DTDTDLTMKL DYLSKDVKHI
101: KADNKCISSR KDIKTARNED HQEAFEVHEQ PGLKKTRVCV KAPCEDPSIN DGCQWRKYGQ KTAKANPLPR AYYRCSMSSN CPVRKQVQRC GEDDTSAYMT
201: TYEGTHDHPL PMEATHMAAG TSAAASLLQS GSSSSPSLSY YFPFHHVSFS TTNAHPTVTL DLTRPNYDPN QLPTHSSLSF SSSSSDRPSP TNSHTLSFSD
301: MAESEKSDVD KEIRSSVSSC EAYFEKVQSR KNLPKSLQDT LNSAFAGIPV SSFPQVPGGR VIEIPAETSV SEAVKILSDS KILSAPVINK DHETSLDWKE
401: RYSGIIDYSS IILWVLESAE LAAIALSATS ATAAGVGAGA VGALGVAALG VTGPVAAAGL AAAAVGAAVA GGVAADRGIG KDAVTAADSL GKDFYQVILQ
501: EEPFRSTTVG TILKSFRYAP FLPVSTESSM LSVLLLLSKY RLRNVPVIKP GEPDIKNYIT QSAVVHGLEG CKGRDWFDHI SALPISDLGL PFMSPNEVIS
601: IGSEELILEA FKRMRDSNIG GLPVVEGANK KVVGNISMRD IRYLLLQPEV FSNFRQLTVK TFAAKIATAG DKYGSASLAI TCRPYSTLGS VINSLASRSV
701: HRVYVVDGDE DELYGVITLR DVISCFVSEP PNYFENCLGF SVKEVLNR

Best Arabidopsis Sequence Match ( AT1G69800.2 )
(BLAST)

001: MHFIRTRVTA RKAKPKICLK FFKLSRYQDM AGSEAVEDKE IKSAVSSCEA YFEKVQSRKN LPKSLQETLN SAFAGIPVSS FPQVPGGRVI EIQAETPVSE
101: AVKILSDSKI LSAPVINTDH ESSLDWRERY LGIIDYSSII LWVLESAELA AIALSATSAT AAGVGAGAVG ALGVAALGMT GPVAAAGLAA AAVGAAVAGG
201: VAAERGIGKD APTAADKLGK DFYEVILQEE PFKSTTVRTI LKSFRWAPFL PVSTESSMLS VMLLLSKYRL RNVPVIKTGE PDIKNYVTQS AVVHGLEGCK
301: GRDWFDHISA LPISDLGLPF MSPNEVISIE SEELILEAFK RMRDNNIGGL PVVEGLNKKI VGNISMRDIR YLLLQPEVFS NFRQLTVKSF ATKIATAGEE
401: YGLAIPAITC RPDSTLGSVI NSLASRSVHR VYVAAGDENE LYGVITLRDV ISCFVSEPPN YFENCLGFSV KEMLNR

Arabidopsis Description

Cystathionine beta-synthase (CBS) protein [Source:TAIR;Acc:AT1G69800]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.