Factsheet for Bra027057.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY12937	Canola	nucleus	99.64	99.64
CDY19535	Canola	nucleus	97.83	97.83
AT1G62300.1	Thale cress	nucleus	86.05	85.9
Bra034482.1-P	Field mustard	nucleus	75.0	81.66
PGSC0003DMT400056725	Potato	nucleus	48.91	54.44
Solyc02g032950.2.1	Tomato	nucleus	48.73	54.02
GSMUA_Achr3P31130_001	Banana	mitochondrion, nucleus	34.06	53.71
GSMUA_Achr3P03090_001	Banana	nucleus	37.14	53.66
Bra013584.1-P	Field mustard	nucleus	51.63	52.97
VIT_10s0116g01200.t01	Wine grape	nucleus	51.09	52.71
PGSC0003DMT400042400	Potato	nucleus	51.81	51.72
Solyc02g080890.2.1	Tomato	nucleus	51.45	51.64
KRH36485	Soybean	nucleus	50.54	51.57
KRH02033	Soybean	nucleus	45.47	51.33
GSMUA_Achr5P16750_001	Banana	nucleus	44.93	51.03
KRH11472	Soybean	nucleus	51.45	50.99
KRH51128	Soybean	nucleus, plastid	47.28	50.48
Bra000793.1-P	Field mustard	nucleus	47.1	50.1
GSMUA_Achr10P...	Banana	nucleus	43.3	48.19
Bra029491.1-P	Field mustard	nucleus	42.93	48.17
GSMUA_Achr2P15200_001	Banana	nucleus	46.38	48.12
GSMUA_Achr10P...	Banana	nucleus	42.93	46.47
GSMUA_Achr6P13630_001	Banana	nucleus	43.48	45.8
GSMUA_Achr6P05880_001	Banana	nucleus	39.49	45.8
GSMUA_Achr6P07620_001	Banana	nucleus, plastid	36.96	41.8
TraesCS3A01G167200.1	Wheat	nucleus	38.59	37.04
TraesCS3B01G199000.2	Wheat	nucleus	38.77	36.9
Zm00001d039245_P001	Maize	nucleus	35.87	36.6
Bra019123.1-P	Field mustard	nucleus	12.86	36.6
EES02155	Sorghum	nucleus	36.41	35.26
HORVU3Hr1G033740.2	Barley	nucleus, plastid	38.59	33.86
TraesCS3D01G173300.2	Wheat	plastid	38.59	33.49
Bra036315.1-P	Field mustard	nucleus	29.71	33.47
Bra007884.1-P	Field mustard	nucleus	22.28	32.11
Bra008435.1-P	Field mustard	nucleus	16.67	31.72
Bra004285.1-P	Field mustard	nucleus	18.66	31.4
Bra010220.1-P	Field mustard	nucleus	17.03	30.52
Bra025693.1-P	Field mustard	nucleus	15.76	30.31
Bra011299.1-P	Field mustard	nucleus	17.21	29.97
Bra035148.1-P	Field mustard	nucleus	16.12	29.67
Bra003588.1-P	Field mustard	nucleus	15.58	28.96
Bra016535.1-P	Field mustard	nucleus	24.28	28.27
Bra023983.1-P	Field mustard	nucleus	17.39	27.83
Bra031053.1-P	Field mustard	nucleus	23.37	27.45
Bra040505.1-P	Field mustard	nucleus	25.18	25.98
Bra006283.1-P	Field mustard	nucleus	24.64	25.81
Bra023505.1-P	Field mustard	nucleus	23.73	25.39
Bra008719.1-P	Field mustard	nucleus	23.91	23.96
Os01t0246700-01	Rice	nucleus	15.94	21.31
Bra016263.1-P	Field mustard	nucleus	21.01	15.51
Bra025692.1-P	Field mustard	nucleus	6.7	15.35

Protein Annotations

MapMan:15.5.22	Gene3D:2.20.25.80	EnsemblPlantsGene:Bra027057	EnsemblPlants:Bra027057.1	EnsemblPlants:Bra027057.1-P	ncoils:Coil
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:IPR003657
InterPro:IPR036576	UniProt:M4EE46	PFAM:PF03106	PFscan:PS50811	PANTHER:PTHR31429	PANTHER:PTHR31429:SF31
SMART:SM00774	SUPFAM:SSF118290	UniParc:UPI0002542576	InterPro:WRKY_dom	InterPro:WRKY_dom_sf	SEG:seg

Description

AT1G62300 (E=2e-253) WRKY6, ATWRKY6 | WRKY6; transcription factor

Coordinates

chrA09:+:8072741..8075149

Molecular Weight (calculated)

60457.4 Da

IEP (calculated)

6.077

GRAVY (calculated)

-0.761

Length

552 amino acids

Sequence
(BLAST)

001: MAGGWSGLTL DSSSLDLINP NRFKNNNHRR FLNPLTMSRM GDEDDQKTNM SIDGSEFRFP VSLSGIRDRE DDDSSSGVGR ENDREVPGEV DFFSDKKSRV
101: CQDEVDDAGL RVKKEEQDDR TDVNTGLNLR TTVNARSDQS VIDNGESSEM EDKRANNELV KLQDELKKMT MENEKLRELL TQVSNNYTSL HMHLVSLMQQ
201: QQQQQNKALE AAGKHEETIV PRQFIDLGPS RASDEAEDLS NSSSEDRTRS GGCSAVERRN NEVRDGKRLG REESPETESN KVQKVNNSSP PTFEQSTEAT
301: MRKARVSVRA RSEATMISDG CQWRKYGQKM AKGNPCPRAY YRCTMATGCP VRKQVQRCAE DRSILITTYE GNHNHPLPPA AVAMASTTMA AANMLLSGSM
401: SSHDGMMNPT NLLARAVLPC STSMATISAS APFPTVTLDL THAPPLPNGS SPSTAAATNN HNSLMLRPQQ QMTNLPPNML PHVIGQALYN QSKFSGLQFS
501: SGSPSAAQSH AVADTISALT ADPNFTAALA SVISSMINGS NHHDGEGNNK NQ

Best Arabidopsis Sequence Match ( AT1G62300.1 )
(BLAST)

001: MDRGWSGLTL DSSSLDLLNP NRISHKNHRR FSNPLAMSRI DEEDDQKTRI STNGSEFRFP VSLSGIRDRE DEDFSSGVAG DNDREVPGEV DFFSDKKSRV
101: CREDDEGFRV KKEEQDDRTD VNTGLNLRTT GNTKSDESMI DDGESSEMED KRAKNELVKL QDELKKMTMD NQKLRELLTQ VSNSYTSLQM HLVSLMQQQQ
201: QQNNKVIEAA EKPEETIVPR QFIDLGPTRA VGEAEDVSNS SSEDRTRSGG SSAAERRSNG KRLGREESPE TESNKIQKVN STTPTTFDQT AEATMRKARV
301: SVRARSEAPM ISDGCQWRKY GQKMAKGNPC PRAYYRCTMA TGCPVRKQVQ RCAEDRSILI TTYEGNHNHP LPPAAVAMAS TTTAAANMLL SGSMSSHDGM
401: MNPTNLLARA VLPCSTSMAT ISASAPFPTV TLDLTHSPPP PNGSNPSSSA ATNNNHNSLM QRPQQQQQQM TNLPPGMLPH VIGQALYNQS KFSGLQFSGG
501: SPSTAAFSQS HAVADTITAL TADPNFTAAL AAVISSMING TNHHDGEGNN KNQ

Arabidopsis Description

WRKY6Uncharacterized protein At1g62300 (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SV11]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.