CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
ChloroP:	plastid
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d039245_P001	Maize	nucleus	79.12	83.36
TraesCS3A01G167200.1	Wheat	nucleus	62.28	61.74
TraesCS3B01G199000.2	Wheat	nucleus	62.11	61.03
HORVU3Hr1G033740.2	Barley	nucleus, plastid	61.75	55.96
TraesCS3D01G173300.2	Wheat	plastid	62.28	55.82
Os01t0246700-01	Rice	nucleus	39.82	54.96
CDX97845	Canola	nucleus	20.88	49.38
GSMUA_Achr3P03090_001	Banana	nucleus	32.98	49.21
GSMUA_Achr5P16750_001	Banana	nucleus	37.89	44.44
GSMUA_Achr10P...	Banana	nucleus	37.19	42.74
Solyc02g032950.2.1	Tomato	nucleus	36.84	42.17
GSMUA_Achr6P13630_001	Banana	nucleus	38.6	41.98
PGSC0003DMT400056725	Potato	nucleus	36.32	41.73
GSMUA_Achr2P15200_001	Banana	nucleus	38.95	41.73
GSMUA_Achr6P05880_001	Banana	nucleus	34.74	41.6
VIT_10s0116g01200.t01	Wine grape	nucleus	38.77	41.31
GSMUA_Achr10P...	Banana	nucleus	35.96	40.2
Solyc02g080890.2.1	Tomato	nucleus	38.77	40.18
PGSC0003DMT400042400	Potato	nucleus	38.95	40.14
KRH02033	Soybean	nucleus	33.51	39.06
CDX82900	Canola	nucleus	35.61	38.96
VIT_12s0059g00880.t01	Wine grape	nucleus	40.18	38.62
KRH51128	Soybean	nucleus, plastid	34.91	38.49
KRH36485	Soybean	nucleus	36.32	38.26
AT1G62300.1	Thale cress	nucleus	36.49	37.61
Bra013584.1-P	Field mustard	nucleus	35.44	37.55
AT4G22070.1	Thale cress	nucleus	35.44	37.55
KRH11472	Soybean	nucleus	36.49	37.34
PGSC0003DMT400038852	Potato	nucleus	36.49	37.34
CDY24892	Canola	nucleus	34.21	37.21
Bra034482.1-P	Field mustard	nucleus	32.81	36.88
AT4G04450.1	Thale cress	nucleus	34.04	36.74
CDY21301	Canola	nucleus	32.63	36.69
CDX94553	Canola	nucleus	31.58	36.66
CDY19535	Canola	nucleus	35.44	36.59
CDY12937	Canola	nucleus	35.44	36.59
CDX90863	Canola	nucleus	32.46	36.49
GSMUA_Achr6P07620_001	Banana	nucleus, plastid	31.23	36.48
Bra027057.1-P	Field mustard	nucleus	35.26	36.41
Bra000793.1-P	Field mustard	nucleus	32.81	36.03
CDY08634	Canola	nucleus	31.75	35.98
CDY16669	Canola	nucleus	30.7	35.57
Bra029491.1-P	Field mustard	nucleus	30.0	34.76
Solyc07g051840.2.1	Tomato	nucleus	37.72	34.07
KRH22585	Soybean	nucleus	36.49	33.88
KRH25355	Soybean	nucleus	35.61	33.06
KRH56160	Soybean	nucleus	35.96	32.64
KXG22547	Sorghum	nucleus	32.63	29.48
EES03177	Sorghum	nucleus	17.02	29.22
EES00609	Sorghum	nucleus	29.12	28.52
EES02331	Sorghum	nucleus	27.37	28.47
KXG21247	Sorghum	nucleus	27.02	27.16
EER98905	Sorghum	nucleus, plastid	15.26	26.61
OQU75809	Sorghum	nucleus	28.6	26.08
KXG35639	Sorghum	nucleus	12.63	24.41
EER90124	Sorghum	nucleus	14.39	23.98
EER88729	Sorghum	nucleus	14.21	23.28
EES05866	Sorghum	nucleus	23.16	22.84
EES04642	Sorghum	nucleus	14.56	22.8

Protein Annotations

MapMan:15.5.22	Gene3D:2.20.25.80	EntrezGene:8078066	UniProt:C5XJG7	ncoils:Coil	EnsemblPlants:EES02155
ProteinID:EES02155	ProteinID:EES02155.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0043565	InterPro:IPR003657	InterPro:IPR036576	PFAM:PF03106	PFscan:PS50811	PANTHER:PTHR31429
PANTHER:PTHR31429:SF31	SMART:SM00774	EnsemblPlantsGene:SORBI_3003G000600	SUPFAM:SSF118290	unigene:Sbi.19928	UniParc:UPI0001A84D19
InterPro:WRKY_dom	InterPro:WRKY_dom_sf	RefSeq:XP_002457035.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr3:-:65678..68474

Molecular Weight (calculated)

59485.6 Da

IEP (calculated)

8.420

GRAVY (calculated)

-0.456

Length

570 amino acids

Sequence
(BLAST)

001: MDKAHLGVGG GLLALDASPR PLGFLSPTAF HRARTTAMEA ADDGNGTPPP GSRVRRSVEV DFFSDQKIAA DAANNNTCGR TTVSPGSGSG ASCLAIKKED
101: LTINLLPGTG SNANDDEAAT RLRLLDQDKQ SRNTNEMQAE LARMNDENQR LRGMLTQVTS SYQALQMHLV ALMQARAGGQ AQLMLPPVAQ ALPPTTDGAA
201: AAVMPLPRQF LGLGPAAAAE ETSNSSTEVG SPRRSSSTGG NRRAERGDSP DASTRQQQVA QQQQEASMRK ARVSVRARSE APIIADGCQW RKYGQKMAKG
301: NPCPRAYYRC TMANGCPVRK QVQRCADDRS ILITTYEGTH NHPLPPAAMA MASTTSAAAS MLLSGSMPSG DMMTSNFLAR AVLPCSSSMA TISASAPFPT
401: VTLDLTHGPP AAARPQPHFQ VPLPPHQQVQ QQHHHLQAAA LYNAHQSSSK FSGLHMSSSS TSDNNNNVGT SSRAAVAAAD APPHMDTVTA AAAAITADPN
501: FTVALAAAIT SIIGGGGGHP IPIAIHHGQG QGQEQGQQQA PTSNSNANNN NNAVVTSSSN NTATSNSETQ

Best Arabidopsis Sequence Match ( AT1G62300.1 )
(BLAST)

001: MDRGWSGLTL DSSSLDLLNP NRISHKNHRR FSNPLAMSRI DEEDDQKTRI STNGSEFRFP VSLSGIRDRE DEDFSSGVAG DNDREVPGEV DFFSDKKSRV
101: CREDDEGFRV KKEEQDDRTD VNTGLNLRTT GNTKSDESMI DDGESSEMED KRAKNELVKL QDELKKMTMD NQKLRELLTQ VSNSYTSLQM HLVSLMQQQQ
201: QQNNKVIEAA EKPEETIVPR QFIDLGPTRA VGEAEDVSNS SSEDRTRSGG SSAAERRSNG KRLGREESPE TESNKIQKVN STTPTTFDQT AEATMRKARV
301: SVRARSEAPM ISDGCQWRKY GQKMAKGNPC PRAYYRCTMA TGCPVRKQVQ RCAEDRSILI TTYEGNHNHP LPPAAVAMAS TTTAAANMLL SGSMSSHDGM
401: MNPTNLLARA VLPCSTSMAT ISASAPFPTV TLDLTHSPPP PNGSNPSSSA ATNNNHNSLM QRPQQQQQQM TNLPPGMLPH VIGQALYNQS KFSGLQFSGG
501: SPSTAAFSQS HAVADTITAL TADPNFTAAL AAVISSMING TNHHDGEGNN KNQ

Arabidopsis Description

WRKY6Uncharacterized protein At1g62300 (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SV11]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.