Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
CDY16669 | Canola | nucleus | 76.7 | 82.32 |
Bra029491.1-P | Field mustard | nucleus | 76.14 | 81.71 |
CDX94553 | Canola | nucleus | 75.95 | 81.67 |
CDY21301 | Canola | nucleus | 78.41 | 81.66 |
Bra000793.1-P | Field mustard | nucleus | 79.55 | 80.92 |
CDX90863 | Canola | nucleus | 77.46 | 80.67 |
AT4G22070.1 | Thale cress | nucleus | 74.24 | 72.86 |
GSMUA_Achr3P31130_001 | Banana | mitochondrion, nucleus | 34.85 | 52.57 |
GSMUA_Achr5P16750_001 | Banana | nucleus | 47.73 | 51.85 |
VIT_10s0116g01200.t01 | Wine grape | nucleus | 52.27 | 51.59 |
KRH02033 | Soybean | nucleus | 47.35 | 51.12 |
KRH36485 | Soybean | nucleus | 51.52 | 50.28 |
Solyc02g080890.2.1 | Tomato | nucleus | 51.89 | 49.82 |
PGSC0003DMT400056725 | Potato | nucleus | 46.78 | 49.8 |
GSMUA_Achr3P03090_001 | Banana | nucleus | 35.98 | 49.74 |
Solyc02g032950.2.1 | Tomato | nucleus | 46.78 | 49.6 |
AT1G62300.1 | Thale cress | nucleus | 51.89 | 49.55 |
PGSC0003DMT400042400 | Potato | nucleus | 51.7 | 49.37 |
KRH11472 | Soybean | nucleus | 51.7 | 49.01 |
GSMUA_Achr10P... | Banana | nucleus | 45.08 | 47.98 |
KRH51128 | Soybean | nucleus, plastid | 46.21 | 47.2 |
GSMUA_Achr2P15200_001 | Banana | nucleus | 46.59 | 46.24 |
GSMUA_Achr6P13630_001 | Banana | nucleus | 45.83 | 46.18 |
GSMUA_Achr10P... | Banana | nucleus | 44.32 | 45.88 |
GSMUA_Achr6P05880_001 | Banana | nucleus | 40.53 | 44.96 |
GSMUA_Achr6P07620_001 | Banana | nucleus, plastid | 36.17 | 39.14 |
AT4G01720.1 | Thale cress | nucleus | 33.33 | 35.99 |
TraesCS3B01G199000.2 | Wheat | nucleus | 39.39 | 35.86 |
TraesCS3A01G167200.1 | Wheat | nucleus | 39.02 | 35.83 |
Zm00001d039245_P001 | Maize | nucleus | 36.17 | 35.3 |
EES02155 | Sorghum | nucleus | 36.74 | 34.04 |
HORVU3Hr1G033740.2 | Barley | nucleus, plastid | 39.02 | 32.75 |
TraesCS3D01G173300.2 | Wheat | plastid | 39.2 | 32.55 |
AT1G80840.1 | Thale cress | nucleus | 17.99 | 31.46 |
AT1G69810.1 | Thale cress | nucleus | 22.16 | 30.23 |
AT1G18860.1 | Thale cress | nucleus | 28.03 | 28.03 |
AT4G31800.1 | Thale cress | nucleus | 16.1 | 27.42 |
AT1G68150.1 | Thale cress | nucleus | 19.13 | 27.01 |
AT2G25000.1 | Thale cress | nucleus | 13.07 | 25.46 |
AT5G15130.1 | Thale cress | nucleus | 25.0 | 24.09 |
Os01t0246700-01 | Rice | nucleus | 15.15 | 19.37 |
Protein Annotations
MapMan:15.5.22 | Gene3D:2.20.25.80 | EntrezGene:825775 | ProteinID:AAD29757.1 | EMBL:AB493676 | ProteinID:AEE82389.1 |
ProteinID:ANM66993.1 | ArrayExpress:AT4G04450 | EnsemblPlantsGene:AT4G04450 | RefSeq:AT4G04450 | TAIR:AT4G04450 | RefSeq:AT4G04450-TAIR-G |
EnsemblPlants:AT4G04450.1 | TAIR:AT4G04450.1 | EMBL:AY052650 | ProteinID:CAB77913.1 | ncoils:Coil | EMBL:DQ446799 |
GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 |
GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 |
GO:GO:0044212 | GO:GO:0045892 | InterPro:IPR003657 | InterPro:IPR036576 | RefSeq:NP_001328851.1 | RefSeq:NP_192354.1 |
PFAM:PF03106 | PO:PO:0000293 | PO:PO:0007616 | PO:PO:0009046 | PFscan:PS50811 | PANTHER:PTHR31429 |
PANTHER:PTHR31429:SF31 | UniProt:Q1PEB9 | UniProt:Q9XEC3 | SMART:SM00774 | SUPFAM:SSF118290 | UniParc:UPI0000138F82 |
Symbol:WRKY42 | InterPro:WRKY_dom | InterPro:WRKY_dom_sf | SEG:seg | : | : |
Description
WRKY42WRKY transcription factor 42 [Source:UniProtKB/Swiss-Prot;Acc:Q9XEC3]
Coordinates
chr4:+:2218042..2221250
Molecular Weight (calculated)
58074.8 Da
IEP (calculated)
7.088
GRAVY (calculated)
-0.762
Length
528 amino acids
Sequence
(BLAST)
(BLAST)
001: MFRFPVSLGG GPRENLKPSD EQHQRAVVNE VDFFRSAEKR DRVSREEQNI IADETHRVHV KRENSRVDDH DDRSTDHINI GLNLLTANTG SDESMVDDGL
101: SVDMEEKRTK CENAQLREEL KKASEDNQRL KQMLSQTTNN FNSLQMQLVA VMRQQEDHHH LATTENNDNV KNRHEVPEMV PRQFIDLGPH SDEVSSEERT
201: TVRSGSPPSL LEKSSSRQNG KRVLVREESP ETESNGWRNP NKVPKHHASS SICGGNGSEN ASSKVIEQAA AEATMRKARV SVRARSEAPM LSDGCQWRKY
301: GQKMAKGNPC PRAYYRCTMA VGCPVRKQVQ RCAEDRTILI TTYEGNHNHP LPPAAMNMAS TTTAAASMLL SGSTMSNQDG LMNPTNLLAR TILPCSSSMA
401: TISASAPFPT ITLDLTESPN GNNPTNNPLM QFSQRSGLVE LNQSVLPHMM GQALYYNQQS KFSGLHMPSQ PLNAGESVSA ATAAIASNPN FAAALAAAIT
501: SIINGSNNQQ NGNNNNSNVT TSNVDNRQ
101: SVDMEEKRTK CENAQLREEL KKASEDNQRL KQMLSQTTNN FNSLQMQLVA VMRQQEDHHH LATTENNDNV KNRHEVPEMV PRQFIDLGPH SDEVSSEERT
201: TVRSGSPPSL LEKSSSRQNG KRVLVREESP ETESNGWRNP NKVPKHHASS SICGGNGSEN ASSKVIEQAA AEATMRKARV SVRARSEAPM LSDGCQWRKY
301: GQKMAKGNPC PRAYYRCTMA VGCPVRKQVQ RCAEDRTILI TTYEGNHNHP LPPAAMNMAS TTTAAASMLL SGSTMSNQDG LMNPTNLLAR TILPCSSSMA
401: TISASAPFPT ITLDLTESPN GNNPTNNPLM QFSQRSGLVE LNQSVLPHMM GQALYYNQQS KFSGLHMPSQ PLNAGESVSA ATAAIASNPN FAAALAAAIT
501: SIINGSNNQQ NGNNNNSNVT TSNVDNRQ
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.