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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 4
  • mitochondrion 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY16669 Canola nucleus 76.7 82.32
Bra029491.1-P Field mustard nucleus 76.14 81.71
CDX94553 Canola nucleus 75.95 81.67
CDY21301 Canola nucleus 78.41 81.66
Bra000793.1-P Field mustard nucleus 79.55 80.92
CDX90863 Canola nucleus 77.46 80.67
AT4G22070.1 Thale cress nucleus 74.24 72.86
GSMUA_Achr3P31130_001 Banana mitochondrion, nucleus 34.85 52.57
GSMUA_Achr5P16750_001 Banana nucleus 47.73 51.85
VIT_10s0116g01200.t01 Wine grape nucleus 52.27 51.59
KRH02033 Soybean nucleus 47.35 51.12
KRH36485 Soybean nucleus 51.52 50.28
Solyc02g080890.2.1 Tomato nucleus 51.89 49.82
PGSC0003DMT400056725 Potato nucleus 46.78 49.8
GSMUA_Achr3P03090_001 Banana nucleus 35.98 49.74
Solyc02g032950.2.1 Tomato nucleus 46.78 49.6
AT1G62300.1 Thale cress nucleus 51.89 49.55
PGSC0003DMT400042400 Potato nucleus 51.7 49.37
KRH11472 Soybean nucleus 51.7 49.01
GSMUA_Achr10P... Banana nucleus 45.08 47.98
KRH51128 Soybean nucleus, plastid 46.21 47.2
GSMUA_Achr2P15200_001 Banana nucleus 46.59 46.24
GSMUA_Achr6P13630_001 Banana nucleus 45.83 46.18
GSMUA_Achr10P... Banana nucleus 44.32 45.88
GSMUA_Achr6P05880_001 Banana nucleus 40.53 44.96
GSMUA_Achr6P07620_001 Banana nucleus, plastid 36.17 39.14
AT4G01720.1 Thale cress nucleus 33.33 35.99
TraesCS3B01G199000.2 Wheat nucleus 39.39 35.86
TraesCS3A01G167200.1 Wheat nucleus 39.02 35.83
Zm00001d039245_P001 Maize nucleus 36.17 35.3
EES02155 Sorghum nucleus 36.74 34.04
HORVU3Hr1G033740.2 Barley nucleus, plastid 39.02 32.75
TraesCS3D01G173300.2 Wheat plastid 39.2 32.55
AT1G80840.1 Thale cress nucleus 17.99 31.46
AT1G69810.1 Thale cress nucleus 22.16 30.23
AT1G18860.1 Thale cress nucleus 28.03 28.03
AT4G31800.1 Thale cress nucleus 16.1 27.42
AT1G68150.1 Thale cress nucleus 19.13 27.01
AT2G25000.1 Thale cress nucleus 13.07 25.46
AT5G15130.1 Thale cress nucleus 25.0 24.09
Os01t0246700-01 Rice nucleus 15.15 19.37
Protein Annotations
MapMan:15.5.22Gene3D:2.20.25.80EntrezGene:825775ProteinID:AAD29757.1EMBL:AB493676ProteinID:AEE82389.1
ProteinID:ANM66993.1ArrayExpress:AT4G04450EnsemblPlantsGene:AT4G04450RefSeq:AT4G04450TAIR:AT4G04450RefSeq:AT4G04450-TAIR-G
EnsemblPlants:AT4G04450.1TAIR:AT4G04450.1EMBL:AY052650ProteinID:CAB77913.1ncoils:CoilEMBL:DQ446799
GO:GO:0003674GO:GO:0003676GO:GO:0003677GO:GO:0003700GO:GO:0005488GO:GO:0005515
GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005634GO:GO:0006139GO:GO:0006351
GO:GO:0006355GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009987GO:GO:0043565
GO:GO:0044212GO:GO:0045892InterPro:IPR003657InterPro:IPR036576RefSeq:NP_001328851.1RefSeq:NP_192354.1
PFAM:PF03106PO:PO:0000293PO:PO:0007616PO:PO:0009046PFscan:PS50811PANTHER:PTHR31429
PANTHER:PTHR31429:SF31UniProt:Q1PEB9UniProt:Q9XEC3SMART:SM00774SUPFAM:SSF118290UniParc:UPI0000138F82
Symbol:WRKY42InterPro:WRKY_domInterPro:WRKY_dom_sfSEG:seg::
Description
WRKY42WRKY transcription factor 42 [Source:UniProtKB/Swiss-Prot;Acc:Q9XEC3]
Coordinates
chr4:+:2218042..2221250
Molecular Weight (calculated)
58074.8 Da
IEP (calculated)
7.088
GRAVY (calculated)
-0.762
Length
528 amino acids
Sequence
(BLAST)
001: MFRFPVSLGG GPRENLKPSD EQHQRAVVNE VDFFRSAEKR DRVSREEQNI IADETHRVHV KRENSRVDDH DDRSTDHINI GLNLLTANTG SDESMVDDGL
101: SVDMEEKRTK CENAQLREEL KKASEDNQRL KQMLSQTTNN FNSLQMQLVA VMRQQEDHHH LATTENNDNV KNRHEVPEMV PRQFIDLGPH SDEVSSEERT
201: TVRSGSPPSL LEKSSSRQNG KRVLVREESP ETESNGWRNP NKVPKHHASS SICGGNGSEN ASSKVIEQAA AEATMRKARV SVRARSEAPM LSDGCQWRKY
301: GQKMAKGNPC PRAYYRCTMA VGCPVRKQVQ RCAEDRTILI TTYEGNHNHP LPPAAMNMAS TTTAAASMLL SGSTMSNQDG LMNPTNLLAR TILPCSSSMA
401: TISASAPFPT ITLDLTESPN GNNPTNNPLM QFSQRSGLVE LNQSVLPHMM GQALYYNQQS KFSGLHMPSQ PLNAGESVSA ATAAIASNPN FAAALAAAIT
501: SIINGSNNQQ NGNNNNSNVT TSNVDNRQ
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.