Factsheet for GSMUA_Achr6P13630_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	nucleus	70.8	74.8
GSMUA_Achr3P03090_001	Banana	nucleus	46.76	64.14
GSMUA_Achr5P16750_001	Banana	nucleus	56.11	60.49
GSMUA_Achr2P15200_001	Banana	nucleus	57.44	56.58
GSMUA_Achr3P31130_001	Banana	mitochondrion, nucleus	37.6	56.29
CDX97845	Canola	nucleus	24.43	53.11
GSMUA_Achr10P...	Banana	nucleus	51.15	52.55
GSMUA_Achr6P05880_001	Banana	nucleus	46.95	51.68
VIT_10s0116g01200.t01	Wine grape	nucleus	51.72	50.65
Solyc02g032950.2.1	Tomato	nucleus	47.9	50.4
PGSC0003DMT400056725	Potato	nucleus	47.33	50.0
KRH36485	Soybean	nucleus	50.76	49.17
KRH02033	Soybean	nucleus	45.23	48.47
GSMUA_Achr10P...	Banana	cytosol, nucleus, plastid	8.97	48.45
VIT_12s0059g00880.t01	Wine grape	nucleus	54.39	48.06
KRH51128	Soybean	nucleus, plastid	46.95	47.58
GSMUA_Achr6P07620_001	Banana	nucleus, plastid	44.27	47.54
KRH11472	Soybean	nucleus	50.38	47.4
PGSC0003DMT400042400	Potato	nucleus	49.81	47.2
AT4G22070.1	Thale cress	nucleus	48.09	46.84
CDX82900	Canola	nucleus	46.56	46.83
Solyc02g080890.2.1	Tomato	nucleus	48.66	46.36
PGSC0003DMT400038852	Potato	nucleus	49.24	46.32
CDX90863	Canola	nucleus	44.47	45.96
Bra013584.1-P	Field mustard	nucleus	47.14	45.91
AT4G04450.1	Thale cress	nucleus	46.18	45.83
CDY21301	Canola	nucleus	44.27	45.76
Bra000793.1-P	Field mustard	nucleus	45.23	45.66
CDX94553	Canola	nucleus	41.98	44.81
CDY16669	Canola	nucleus	41.79	44.51
Bra029491.1-P	Field mustard	nucleus	41.22	43.9
AT1G62300.1	Thale cress	nucleus	46.18	43.76
CDY19535	Canola	nucleus	45.99	43.66
Bra027057.1-P	Field mustard	nucleus	45.8	43.48
CDY12937	Canola	nucleus	45.8	43.48
Bra034482.1-P	Field mustard	nucleus	41.79	43.2
CDY24892	Canola	nucleus	42.75	42.75
Solyc07g051840.2.1	Tomato	nucleus	50.95	42.31
GSMUA_Achr2P18390_001	Banana	nucleus	29.39	41.96
KRH25355	Soybean	nucleus	49.05	41.86
CDY08634	Canola	nucleus	39.89	41.55
KRH22585	Soybean	nucleus	48.66	41.53
KRH56160	Soybean	nucleus	49.05	40.92
Zm00001d039245_P001	Maize	nucleus	41.41	40.11
GSMUA_Achr11P...	Banana	nucleus	31.68	39.62
TraesCS3A01G167200.1	Wheat	nucleus	42.75	38.96
EES02155	Sorghum	nucleus	41.98	38.6
TraesCS3B01G199000.2	Wheat	nucleus	42.18	38.1
GSMUA_Achr7P19340_001	Banana	nucleus	13.93	38.02
HORVU3Hr1G033740.2	Barley	nucleus, plastid	42.75	35.61
TraesCS3D01G173300.2	Wheat	plastid	42.75	35.22
GSMUA_Achr7P08850_001	Banana	nucleus	25.76	34.79
GSMUA_Achr10P...	Banana	nucleus	15.27	34.48
GSMUA_Achr1P05240_001	Banana	nucleus	20.42	32.82
GSMUA_Achr7P13400_001	Banana	nucleus	24.43	31.92
GSMUA_Achr11P...	Banana	nucleus	14.89	31.84
GSMUA_Achr10P...	Banana	nucleus	22.9	31.83
GSMUA_Achr2P05100_001	Banana	nucleus	11.45	31.58
GSMUA_Achr5P16460_001	Banana	nucleus	14.12	31.49
GSMUA_Achr4P01930_001	Banana	extracellular, golgi	16.79	30.45
GSMUA_Achr7P16090_001	Banana	endoplasmic reticulum, nucleus, plastid	12.6	29.6
GSMUA_Achr7P05200_001	Banana	nucleus	15.65	29.29
GSMUA_Achr10P...	Banana	nucleus	15.84	28.82
GSMUA_Achr3P20290_001	Banana	nucleus	20.8	28.46
GSMUA_Achr3P13440_001	Banana	nucleus	14.69	28.0
GSMUA_Achr7P18820_001	Banana	nucleus	23.66	27.62
GSMUA_Achr6P02330_001	Banana	nucleus	18.51	26.29
GSMUA_Achr10P...	Banana	nucleus	23.09	25.26
GSMUA_Achr1P10080_001	Banana	nucleus	16.03	25.07
Os01t0246700-01	Rice	nucleus	18.89	23.97
GSMUA_Achr5P09730_001	Banana	nucleus	20.99	15.45

Protein Annotations

MapMan:15.5.22	Gene3D:2.20.25.80	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0043565	EnsemblPlantsGene:GSMUA_Achr6G13630_001	EnsemblPlants:GSMUA_Achr6P13630_001	EnsemblPlants:GSMUA_Achr6T13630_001	InterPro:IPR003657
InterPro:IPR036576	UniProt:M0T6R1	PFAM:PF03106	PFscan:PS50811	PANTHER:PTHR31429	PANTHER:PTHR31429:SF31
SMART:SM00774	SUPFAM:SSF118290	UniParc:UPI0002950F6D	InterPro:WRKY_dom	InterPro:WRKY_dom_sf	SEG:seg

Description

Putative Probable WRKY transcription factor 42 [Source:GMGC_GENE;Acc:GSMUA_Achr6G13630_001]

Coordinates

chr6:-:9080224..9082337

Molecular Weight (calculated)

56274.0 Da

IEP (calculated)

6.756

GRAVY (calculated)

-0.542

Length

524 amino acids

Sequence
(BLAST)

001: MTHGGTSGPL SLASSLGSRG GVLKRQQPMD SGDHHSISTA IEFPISLNPL IDAPMVVEAK DEVSNDRVVA TEMDFFSGER KDTTSLVEPD LDLKVPSLTR
101: IKKEDLTIQT GLHLHTGNTG SDQSTVDDGL SRNEDDEEGK NELAAMQAEL ARMNEENQKL RGILSQVTTN FNALQMHLAT LMQQRSHQSH ETPQEHETDA
201: KNDGHGGVLV PKQFMDLGPA VNDVEPSNSS TVSPDRSASP PANVEVGSMG YDLHKNDGRS TSDQTWNPNK ALKLNPTNQA QEATMRKARV SVRARSEAPM
301: ITDGCQWRKY GQKMAKGNPC PKAYYRCTMA SACPVRKQVQ RCADDRSILI TTYEGTHNHP LPPAAMAMAS TTSAAASMLL SGSMWSTDGL MNSNFPARTT
401: LPCSSSVATV SASAPFPTVT LDLTKNPNPL QYQRPPTGPF SVPFPGMAAT QFPHQKTHLV MPSPSTAETV KAATAAITTD PNFTAALAAA IKSIIGGNHQ
501: CFNNNNGSSN NVNISNITPH KSCS

Best Arabidopsis Sequence Match ( AT4G04450.1 )
(BLAST)

001: MFRFPVSLGG GPRENLKPSD EQHQRAVVNE VDFFRSAEKR DRVSREEQNI IADETHRVHV KRENSRVDDH DDRSTDHINI GLNLLTANTG SDESMVDDGL
101: SVDMEEKRTK CENAQLREEL KKASEDNQRL KQMLSQTTNN FNSLQMQLVA VMRQQEDHHH LATTENNDNV KNRHEVPEMV PRQFIDLGPH SDEVSSEERT
201: TVRSGSPPSL LEKSSSRQNG KRVLVREESP ETESNGWRNP NKVPKHHASS SICGGNGSEN ASSKVIEQAA AEATMRKARV SVRARSEAPM LSDGCQWRKY
301: GQKMAKGNPC PRAYYRCTMA VGCPVRKQVQ RCAEDRTILI TTYEGNHNHP LPPAAMNMAS TTTAAASMLL SGSTMSNQDG LMNPTNLLAR TILPCSSSMA
401: TISASAPFPT ITLDLTESPN GNNPTNNPLM QFSQRSGLVE LNQSVLPHMM GQALYYNQQS KFSGLHMPSQ PLNAGESVSA ATAAIASNPN FAAALAAAIT
501: SIINGSNNQQ NGNNNNSNVT TSNVDNRQ

Arabidopsis Description

WRKY42WRKY transcription factor 42 [Source:UniProtKB/Swiss-Prot;Acc:Q9XEC3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.