Factsheet for GSMUA_Achr3P20290_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P02330_001	Banana	nucleus	54.05	56.1
GSMUA_Achr7P18820_001	Banana	nucleus	63.19	53.9
GSMUA_Achr10P...	Banana	nucleus	61.88	49.48
GSMUA_Achr10P...	Banana	cytosol, nucleus, plastid	10.97	43.3
CDX81493	Canola	nucleus	34.73	42.9
KRH42243	Soybean	nucleus	19.06	40.33
Bra004285.1-P	Field mustard	nucleus	33.42	39.02
CDX96044	Canola	nucleus	33.16	38.72
CDY01891	Canola	nucleus	32.64	38.11
AT1G68150.1	Thale cress	nucleus	33.68	34.49
PGSC0003DMT400076591	Potato	nucleus	36.29	33.66
TraesCS6A01G326500.2	Wheat	nucleus	48.04	33.27
TraesCS6D01G306300.1	Wheat	nucleus	48.04	32.92
TraesCS6B01G357600.1	Wheat	nucleus	48.04	32.86
VIT_12s0055g00340.t01	Wine grape	nucleus	41.78	32.85
EES05866	Sorghum	nucleus	48.56	32.18
Solyc01g104550.2.1	Tomato	nucleus	38.9	31.37
Zm00001d018203_P001	Maize	nucleus	47.26	31.26
KRH58361	Soybean	nucleus	38.38	30.31
GSMUA_Achr7P19340_001	Banana	nucleus	15.14	30.21
Os02t0770500-00	Rice	nucleus	50.91	30.05
GSMUA_Achr1P05240_001	Banana	nucleus	25.33	29.75
GSMUA_Achr3P31130_001	Banana	mitochondrion, nucleus	26.63	29.14
HORVU6Hr1G079710.2	Barley	nucleus	46.48	28.71
GSMUA_Achr10P...	Banana	nucleus	27.15	27.59
GSMUA_Achr10P...	Banana	nucleus	16.45	27.16
GSMUA_Achr7P08850_001	Banana	nucleus	27.42	27.06
GSMUA_Achr2P05100_001	Banana	nucleus	13.32	26.84
GSMUA_Achr5P16460_001	Banana	nucleus	15.67	25.53
GSMUA_Achr3P03090_001	Banana	nucleus	25.33	25.39
GSMUA_Achr11P...	Banana	nucleus	15.93	24.9
GSMUA_Achr7P13400_001	Banana	nucleus	25.59	24.44
GSMUA_Achr7P05200_001	Banana	nucleus	17.49	23.93
GSMUA_Achr6P05880_001	Banana	nucleus	29.5	23.74
GSMUA_Achr2P18390_001	Banana	nucleus	22.72	23.71
GSMUA_Achr11P...	Banana	nucleus	25.85	23.63
GSMUA_Achr10P...	Banana	nucleus	17.23	22.92
GSMUA_Achr7P16090_001	Banana	endoplasmic reticulum, nucleus, plastid	13.32	22.87
GSMUA_Achr10P...	Banana	nucleus	29.24	22.58
GSMUA_Achr3P13440_001	Banana	nucleus	16.19	22.55
GSMUA_Achr5P16750_001	Banana	nucleus	28.2	22.22
GSMUA_Achr4P01930_001	Banana	extracellular, golgi	16.71	22.15
GSMUA_Achr2P15200_001	Banana	nucleus	30.03	21.62
GSMUA_Achr10P...	Banana	nucleus	28.46	21.37
GSMUA_Achr6P07620_001	Banana	nucleus, plastid	27.15	21.31
GSMUA_Achr6P13630_001	Banana	nucleus	28.46	20.8
GSMUA_Achr1P10080_001	Banana	nucleus	17.49	20.0
GSMUA_Achr5P09730_001	Banana	nucleus	22.98	12.36

Protein Annotations

MapMan:15.5.22	Gene3D:2.20.25.80	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0043565	EnsemblPlantsGene:GSMUA_Achr3G20290_001	EnsemblPlants:GSMUA_Achr3P20290_001	EnsemblPlants:GSMUA_Achr3T20290_001	InterPro:IPR003657
InterPro:IPR036576	UniProt:M0SG95	PFAM:PF03106	PFscan:PS50811	PANTHER:PTHR31429	PANTHER:PTHR31429:SF24
SMART:SM00774	SUPFAM:SSF118290	UniParc:UPI0002965C7B	InterPro:WRKY_dom	InterPro:WRKY_dom_sf	SEG:seg

Description

Putative Whole genome shotgun sequence of line PN40024, scaffold_55.assembly12x (Fragment) [Source:GMGC_GENE;Acc:GSMUA_Achr3G20290_001]

Coordinates

chr3:-:21477637..21479126

Molecular Weight (calculated)

42275.9 Da

IEP (calculated)

4.644

GRAVY (calculated)

-0.818

Length

383 amino acids

Sequence
(BLAST)

001: MHIDLALETA DDEVRALEEA EDGGDREEEE EEKEEGEVAI SNEDKEANKH QEENQTEEKE QSYEKTTAED VIKDELCVLQ AEMERMKEEN RMLEEAIDRT
101: MKDYYDLQIK FADIQQEDQP KEHQVFLSLG RQSSGEIKQA KVADRGSGLA DDEELCLSLS LHTHVDPHQR DDAREEKGKG LKSWAAGELT TITSQSINPA
201: TRKTRVSVRA RCQGPPMNDG CQWRKYGQKV AKGNPCPRAY YRCTVAPGCP VRKQVQRCLE DMSILVTTYE GTHNHPLPVG ATAMASTTAA SANSLSSSPL
301: SYLNPYLANP SPQLSTMRSF TSSAGYSGIF GGRQQLDILG PHHQATSSAA GGGSWISTGH GVWNGEDEKS LAEQVGVIAS TQR

Best Arabidopsis Sequence Match ( AT1G68150.1 )
(BLAST)

001: MGFDFSTSKS KAKRQKRIEV RFASPLMGID LSLKLEAEEK KKEIEGSKHS RENKEDEEHD ASGDEDEQMV KEDEDDSSSL GLRTREEENE REELLQLQIQ
101: MESVKEENTR LRKLVEQTLE DYRHLEMKFP VIDKTKKMDL EMFLGVQGKR CVDITSKARK RGAERSPSME REIGLSLSLE KKQKQEESKE AVQSHHQRYN
201: SSSLDMNMPR IISSSQGNRK ARVSVRARCE TATMNDGCQW RKYGQKTAKG NPCPRAYYRC TVAPGCPVRK QVQRCLEDMS ILITTYEGTH NHPLPVGATA
301: MASTASTSPF LLLDSSDNLS HPSYYQTPQA IDSSLITYPQ NSSYNNRTIR SLNFDGPSRG DHVSSSQNRL NWMM

Arabidopsis Description

WRKY9WRKY9 [Source:UniProtKB/TrEMBL;Acc:A0A178WJS2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.