Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
GSMUA_Achr7P19340_001 | Banana | nucleus | 46.38 | 56.77 |
GSMUA_Achr10P... | Banana | nucleus | 51.49 | 52.16 |
GSMUA_Achr7P16090_001 | Banana | endoplasmic reticulum, nucleus, plastid | 46.81 | 49.33 |
Bra019123.1-P | Field mustard | nucleus | 40.43 | 48.97 |
GSMUA_Achr2P05100_001 | Banana | nucleus | 37.45 | 46.32 |
Solyc12g042590.1.1 | Tomato | nucleus | 42.55 | 46.3 |
PGSC0003DMT400073710 | Potato | nucleus | 42.13 | 45.62 |
GSMUA_Achr11P... | Banana | nucleus | 46.38 | 44.49 |
GSMUA_Achr7P05200_001 | Banana | nucleus | 47.66 | 40.0 |
GSMUA_Achr3P13440_001 | Banana | nucleus | 46.38 | 39.64 |
PGSC0003DMT400019058 | Potato | nucleus | 42.98 | 38.7 |
CDX72327 | Canola | nucleus | 46.81 | 38.6 |
VIT_09s0018g00240.t01 | Wine grape | nucleus | 51.06 | 38.59 |
Solyc08g067340.2.1 | Tomato | nucleus | 41.28 | 38.34 |
GSMUA_Achr4P01930_001 | Banana | extracellular, golgi | 46.81 | 38.06 |
PGSC0003DMT400019061 | Potato | nucleus | 40.85 | 37.94 |
GSMUA_Achr10P... | Banana | nucleus | 46.38 | 37.85 |
Solyc08g067360.2.1 | Tomato | nucleus | 41.28 | 37.6 |
CDX75196 | Canola | nucleus | 45.11 | 37.46 |
CDY22299 | Canola | nucleus | 45.96 | 37.24 |
Bra008435.1-P | Field mustard | nucleus | 45.96 | 37.24 |
CDY67287 | Canola | nucleus | 45.53 | 36.9 |
Bra003588.1-P | Field mustard | nucleus | 46.38 | 36.7 |
CDX79347 | Canola | nucleus | 46.38 | 36.58 |
KRH23643 | Soybean | nucleus | 48.09 | 36.57 |
KRH44560 | Soybean | nucleus | 48.51 | 36.42 |
CDX67971 | Canola | nucleus | 45.96 | 36.36 |
KRH47344 | Soybean | nucleus | 48.09 | 36.33 |
CDX88573 | Canola | nucleus | 46.38 | 36.21 |
AT2G25000.1 | Thale cress | nucleus | 41.7 | 36.16 |
AT1G80840.1 | Thale cress | nucleus | 46.38 | 36.09 |
KRH61669 | Soybean | nucleus | 33.62 | 35.91 |
KRH15674 | Soybean | nucleus | 42.98 | 35.82 |
Bra035148.1-P | Field mustard | nucleus | 45.11 | 35.33 |
CDX87347 | Canola | nucleus | 45.11 | 35.33 |
VIT_04s0008g05760.t01 | Wine grape | nucleus | 47.23 | 35.02 |
CDY39879 | Canola | nucleus | 45.11 | 34.53 |
CDX68787 | Canola | nucleus | 46.81 | 34.48 |
Bra010220.1-P | Field mustard | nucleus | 45.11 | 34.42 |
Bra011299.1-P | Field mustard | nucleus | 46.38 | 34.38 |
KRH09652 | Soybean | nucleus | 47.66 | 33.94 |
AT4G31800.1 | Thale cress | nucleus | 44.68 | 33.87 |
GSMUA_Achr1P10080_001 | Banana | nucleus | 48.09 | 33.73 |
KRH05350 | Soybean | nucleus | 42.55 | 32.05 |
Solyc03g116890.2.1 | Tomato | nucleus | 47.23 | 31.71 |
PGSC0003DMT400073396 | Potato | nucleus | 47.66 | 31.11 |
Bra023983.1-P | Field mustard | nucleus | 45.53 | 31.01 |
CDY70096 | Canola | nucleus | 45.53 | 31.01 |
PGSC0003DMT400051047 | Potato | nucleus | 46.81 | 30.99 |
Solyc06g068460.2.1 | Tomato | nucleus | 47.23 | 30.83 |
GSMUA_Achr10P... | Banana | cytosol, nucleus, plastid | 12.34 | 29.9 |
KRH52329 | Soybean | nucleus | 37.87 | 28.8 |
GSMUA_Achr3P31130_001 | Banana | mitochondrion, nucleus | 30.21 | 20.29 |
GSMUA_Achr7P08850_001 | Banana | nucleus | 30.64 | 18.56 |
GSMUA_Achr3P03090_001 | Banana | nucleus | 29.36 | 18.06 |
GSMUA_Achr1P05240_001 | Banana | nucleus | 24.68 | 17.79 |
GSMUA_Achr7P13400_001 | Banana | nucleus | 29.79 | 17.46 |
GSMUA_Achr11P... | Banana | nucleus | 29.79 | 16.71 |
GSMUA_Achr7P18820_001 | Banana | nucleus | 31.06 | 16.26 |
GSMUA_Achr10P... | Banana | nucleus | 25.96 | 16.18 |
GSMUA_Achr3P20290_001 | Banana | nucleus | 25.53 | 15.67 |
GSMUA_Achr2P18390_001 | Banana | nucleus | 23.83 | 15.26 |
GSMUA_Achr6P07620_001 | Banana | nucleus, plastid | 31.49 | 15.16 |
GSMUA_Achr6P05880_001 | Banana | nucleus | 30.64 | 15.13 |
GSMUA_Achr10P... | Banana | nucleus | 32.77 | 15.1 |
GSMUA_Achr10P... | Banana | nucleus | 30.64 | 15.03 |
GSMUA_Achr6P02330_001 | Banana | nucleus | 22.98 | 14.63 |
GSMUA_Achr5P16750_001 | Banana | nucleus | 30.21 | 14.61 |
GSMUA_Achr6P13630_001 | Banana | nucleus | 31.49 | 14.12 |
GSMUA_Achr10P... | Banana | nucleus | 29.79 | 14.11 |
GSMUA_Achr2P15200_001 | Banana | nucleus | 31.49 | 13.91 |
GSMUA_Achr5P09730_001 | Banana | nucleus | 25.53 | 8.43 |
Protein Annotations
MapMan:15.5.22 | Gene3D:2.20.25.80 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
GO:GO:0009987 | GO:GO:0043565 | EnsemblPlantsGene:GSMUA_Achr5G16460_001 | EnsemblPlants:GSMUA_Achr5P16460_001 | EnsemblPlants:GSMUA_Achr5T16460_001 | InterPro:IPR003657 |
InterPro:IPR036576 | UniProt:M0SZ25 | PFAM:PF03106 | PFscan:PS50811 | PANTHER:PTHR31429 | PANTHER:PTHR31429:SF3 |
SMART:SM00774 | SUPFAM:SSF118290 | UniParc:UPI0002957AF0 | InterPro:WRKY_dom | InterPro:WRKY_dom_sf | : |
Description
Putative Probable WRKY transcription factor 60 [Source:GMGC_GENE;Acc:GSMUA_Achr5G16460_001]
Coordinates
chr5:+:14957650..14958501
Molecular Weight (calculated)
26174.0 Da
IEP (calculated)
9.198
GRAVY (calculated)
-0.685
Length
235 amino acids
Sequence
(BLAST)
(BLAST)
001: MQRERGSVLV EGSSSRKEEA RLASTQFGDL EAELNRISEE NKRLSEMVSN MLTDCVALSG GVPALPKRKR IETNTPGDDD PCKRVRADPV PNASKAYVRI
101: DPKNTSLVVK DGYQWRKYGQ KVTRDNPFPR AYFRCSFAPS CPVKKKVQRS SEDGSILVAT YEGEHNHKHL AQDELYVGGI PCRPLQQRFG NQESPGFHRI
201: LVDQMASSLT KDPSFTAAIA AAISERLLQQ TPVPN
101: DPKNTSLVVK DGYQWRKYGQ KVTRDNPFPR AYFRCSFAPS CPVKKKVQRS SEDGSILVAT YEGEHNHKHL AQDELYVGGI PCRPLQQRFG NQESPGFHRI
201: LVDQMASSLT KDPSFTAAIA AAISERLLQQ TPVPN
001: MLQDEINRVN SENKKLTEML ARVCEKYYAL NNLMEELQSR KSPESVNFQN KQLTGKRKQE LDEFVSSPIG LSLGPIENIT NDKATVSTAY FAAEKSDTSL
101: TVKDGYQWRK YGQKITRDNP SPRAYFRCSF SPSCLVKKKV QRSAEDPSFL VATYEGTHNH TGPHASVSRT VKLDLVQGGL EPVEEKKERG TIQEVLVQQM
201: ASSLTKDPKF TAALATAISG RLIEHSRT
101: TVKDGYQWRK YGQKITRDNP SPRAYFRCSF SPSCLVKKKV QRSAEDPSFL VATYEGTHNH TGPHASVSRT VKLDLVQGGL EPVEEKKERG TIQEVLVQQM
201: ASSLTKDPKF TAALATAISG RLIEHSRT
Arabidopsis Description
WRKY60Probable WRKY transcription factor 60 [Source:UniProtKB/Swiss-Prot;Acc:Q9SK33]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.