Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- extracellular 3
- endoplasmic reticulum 3
- vacuole 3
- plasma membrane 3
- golgi 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU3Hr1G092230.1 | Barley | cytosol | 23.48 | 38.75 |
| KXG33957 | Sorghum | nucleus | 37.88 | 18.38 |
| AT3G27420.1 | Thale cress | nucleus | 32.58 | 17.62 |
| KRG94362 | Soybean | extracellular | 42.42 | 17.45 |
| CDY42568 | Canola | plastid | 34.85 | 17.23 |
| TraesCS3D01G408700.2 | Wheat | nucleus | 36.36 | 17.14 |
| CDY03968 | Canola | nucleus | 29.55 | 16.53 |
| CDY36364 | Canola | mitochondrion | 34.09 | 16.3 |
| KRH07095 | Soybean | nucleus | 38.64 | 15.99 |
| TraesCS3A01G414200.1 | Wheat | nucleus | 31.06 | 15.65 |
| TraesCS3B01G449000.1 | Wheat | cytosol | 34.09 | 15.15 |
| VIT_14s0066g00150.t01 | Wine grape | nucleus | 40.91 | 14.71 |
| Solyc02g067900.2.1 | Tomato | cytosol | 34.85 | 14.02 |
| AT5G40600.1 | Thale cress | endoplasmic reticulum | 34.09 | 13.85 |
| PGSC0003DMT400017933 | Potato | cytosol | 34.85 | 13.81 |
| Bra033010.1-P | Field mustard | cytosol | 30.3 | 8.13 |
| CDY34147 | Canola | cytosol | 31.06 | 7.69 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr6P22990_001 | EnsemblPlants:GSMUA_Achr6T22990_001 | EnsemblPlantsGene:GSMUA_Achr6G22990_001 | Gene3D:1.20.1270.220 | InterPro:IPR027353 | InterPro:IPR038336 |
| InterPro:NET_dom | InterPro:NET_sf | ncoils:Coil | PANTHER:PTHR22880 | PANTHER:PTHR22880:SF180 | PFAM:PF17035 |
| PFscan:PS51525 | SEG:seg | UniParc:UPI000294F737 | UniProt:M0T9E7 | MapMan:35.2 | : |
Description
Putative uncharacterized protein [Source:GMGC_GENE;Acc:GSMUA_Achr6G22990_001]
Coordinates
chr6:-:22240169..22243249
Molecular Weight (calculated)
15241.4 Da
IEP (calculated)
4.452
GRAVY (calculated)
-0.320
Length
132 amino acids
Sequence
(BLAST)
(BLAST)
001: MQMLSLYLYS NLVYNEIQAV KGDGAICMEA VEKYSDKINE KLMEMEENID EYLDMVVSKC RPMTNAEKQQ LGRRIQKLPG EALGGVVDIF RQRNSPATDF
101: PDDVFVNLDE LDNVTLWRLY FHVQAVVKSK EL
101: PDDVFVNLDE LDNVTLWRLY FHVQAVVKSK EL
001: MSKRAAEEMT PSLESNRTGP DFFGYYRAQV EELLSQEEKI PHHNHVDAKK SSAEIIGAEL SDVKQEKLNA LLRQCVLNSI PEVDEMQSRV DSMYLMSQLS
101: NKKRSTLPTN AESVIPEDPR CKEVEDDLRL LMKSDPSLVK EIVGKHSSDL LARLNERQQH LEKLLDNVVT TCRPMSRGEK RDLQKSIKEL PAKNLERVAG
201: IIKNHYVALG KEMPDDVFVI NMEEEDKVLL WRLHYFVVAV QSARKLAS
101: NKKRSTLPTN AESVIPEDPR CKEVEDDLRL LMKSDPSLVK EIVGKHSSDL LARLNERQQH LEKLLDNVVT TCRPMSRGEK RDLQKSIKEL PAKNLERVAG
201: IIKNHYVALG KEMPDDVFVI NMEEEDKVLL WRLHYFVVAV QSARKLAS
Arabidopsis Description
unknown protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G27420.1); Has 18 /.../st hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). [Source:TAIR;Acc:AT5G40600]
SUBAcon: [mitochondrion,nucleus,cytosol]
SUBAcon: [mitochondrion,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.