Factsheet for GSMUA_Achr11P09780_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG92823	Soybean	endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, plastid, vacuole	41.48	64.62
Os10t0518900-01	Rice	nucleus	59.01	61.76
EER91361	Sorghum	nucleus	58.52	59.7
VIT_14s0128g00150.t01	Wine grape	nucleus	58.52	59.55
TraesCS1A01G182000.1	Wheat	nucleus	56.54	59.02
HORVU1Hr1G048250.1	Barley	nucleus	56.54	58.72
TraesCS1B01G199000.1	Wheat	nucleus	56.3	58.61
Zm00001d032439_P002	Maize	nucleus	57.28	58.44
PGSC0003DMT400063395	Potato	nucleus	56.54	58.42
TraesCS1D01G185100.1	Wheat	nucleus	55.8	58.25
Solyc03g115580.2.1	Tomato	nucleus	55.56	57.69
KRH33973	Soybean	nucleus	55.8	56.78
CDY05146	Canola	nucleus	51.85	53.03
AT3G05210.1	Thale cress	nucleus	52.84	52.2
Bra039453.1-P	Field mustard	nucleus	51.11	52.01
CDY27786	Canola	nucleus	50.86	51.37

Protein Annotations

Gene3D:1.10.150.20	MapMan:14.6.4.2	Gene3D:3.40.50.10130	InterPro:ERCC1/RAD10/SWI10	GO:GO:0000724	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003684	GO:GO:0003824	GO:GO:0004518	GO:GO:0004519
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006259	GO:GO:0006281	GO:GO:0006294	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152
GO:GO:0009628	GO:GO:0009987	GO:GO:0010213	GO:GO:0010224	GO:GO:0010332	GO:GO:0016043
GO:GO:0016787	GO:GO:0017108	GO:GO:0090305	EnsemblPlantsGene:GSMUA_Achr11G09780_001	EnsemblPlants:GSMUA_Achr11P09780_001	EnsemblPlants:GSMUA_Achr11T09780_001
UniProt:M0RQV8	PFAM:PD013585	PFAM:PF03834	PFAM:PF14520	PANTHER:PTHR12749	InterPro:Restrct_endonuc-II-like
InterPro:RuvA_2-like	SUPFAM:SSF47781	SUPFAM:SSF52980	TIGRFAMs:TIGR00597	UniParc:UPI0002962677	SEG:seg

Description

DNA excision repair protein ERCC-1 [Source:GMGC_GENE;Acc:GSMUA_Achr11G09780_001]

Coordinates

chr11:-:7614108..7626703

Molecular Weight (calculated)

45230.2 Da

IEP (calculated)

8.449

GRAVY (calculated)

-0.648

Length

405 amino acids

Sequence
(BLAST)

001: METTSGERRR EEGSSRSLPT QRNDDDTEKR GGLIKIPSYQ EVLGTANSSS PKPHNPYPSF SQVFFIKSSE FYTPPLPSLP PPTSSAVDPP LSSTPPFSSS
101: PAAASSSYSS GSASGQNRNA ILVSHRQKGN PLLKHLRNTR WTFADVVCDY LLGQSSCALY ISLRYHLLHP DYLYYRIREL QRNFKLRVVL CHVDVEDVAK
201: PLLEVTRTTM LHDCTLLCGW SFEECGRYLE TLKVYENKPS DSIREQMHSD YLSRLTHALT SIRHVNKTDV VTLGSTFGSL SHIMDASMED LARCPGIGER
301: KVKRLYDTFH EPFRHVSGQP TTIVPETPIR DKNDEPTTST HNAVEPEGQG PTASKPKKDT NLSVRSALTA AFAKYPRRVG KQDMKSTLLE QGKYSSTEAS
401: KDGEN

Best Arabidopsis Sequence Match ( AT3G05210.1 )
(BLAST)

001: MANEDDDGEK SRSLHQQIAR KPKTQIVIGV PSYQEVLESS QTKSTPPSLF KPSQSFSQAF AFVKSSDVYS PPPPSSAAAS SSQPSGASQV PHSSSQTHQT
101: DGASSSSTPV ATGSVPSNTT QNRNAILVSH RQKGNPLLKH IRNVKWVFSD IIPDYVLGQN SCALYLSLRY HLLHPDYLYF RIRELQKNFK LSVVLCHVDV
201: EDTVKPLLEV TKTALLHDCT LLCAWSMTEC ARYLETIKVY ENKPADLIQG QMDTDYLSRL NHSLTSIRHV NKSDVVTLGS TFGSLAHIID ASMEDLARCP
301: GIGERKVKRL YDTFHEPFKR ATSSYPSVVE PPIPEAPVEK DVNSEEPVEE DEDFVEDSRK RKKKEPEPEK TVKTALSAVF ARYSDRLSKK KEKQKEKDTT
401: TASDAETHQN

Arabidopsis Description

ERCC1DNA excision repair protein ERCC-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9MA98]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.