Factsheet for Zm00001d032439_P002

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
ChloroP:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER91361	Sorghum	nucleus	92.7	92.7
Os10t0518900-01	Rice	nucleus	78.59	80.62
HORVU1Hr1G048250.1	Barley	nucleus	75.82	77.18
TraesCS1B01G199000.1	Wheat	nucleus	74.81	76.35
TraesCS1A01G182000.1	Wheat	nucleus	74.56	76.29
TraesCS1D01G185100.1	Wheat	nucleus	73.8	75.52
KRG92823	Soybean	endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, plastid, vacuole	40.05	61.15
GSMUA_Achr11P...	Banana	nucleus	58.44	57.28
VIT_14s0128g00150.t01	Wine grape	nucleus	56.93	56.78
PGSC0003DMT400063395	Potato	nucleus	55.67	56.38
KRH33973	Soybean	nucleus	55.42	55.28
Solyc03g115580.2.1	Tomato	nucleus	54.16	55.13
CDY27786	Canola	nucleus	50.63	50.12
Bra039453.1-P	Field mustard	nucleus	50.13	50.0
CDY05146	Canola	nucleus	49.87	50.0
AT3G05210.1	Thale cress	nucleus	50.13	48.54

Protein Annotations

Gene3D:1.10.150.20	EntrezGene:100192592	MapMan:14.6.4.2	Gene3D:3.40.50.10130	UniProt:B4FBX5	EMBL:BT034613
InterPro:ERCC1/RAD10/SWI10	GO:GO:0000724	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003684
GO:GO:0003824	GO:GO:0004518	GO:GO:0004519	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006259	GO:GO:0006281	GO:GO:0006294
GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009628	GO:GO:0009987	GO:GO:0010213
GO:GO:0010224	GO:GO:0010332	GO:GO:0016043	GO:GO:0016787	GO:GO:0017108	GO:GO:0090305
ProteinID:ONM05060.1	PFAM:PD013585	PFAM:PF03834	PANTHER:PTHR12749	InterPro:Restrct_endonuc-II-like	InterPro:RuvA_2-like
SUPFAM:SSF47781	SUPFAM:SSF52980	TIGRFAMs:TIGR00597	UniParc:UPI00017B644C	EnsemblPlantsGene:Zm00001d032439	EnsemblPlants:Zm00001d032439_P002
EnsemblPlants:Zm00001d032439_T002	SEG:seg	:	:	:	:

Description

DNA excision repair protein ERCC-1

Coordinates

chr1:+:226422742..226426629

Molecular Weight (calculated)

43625.2 Da

IEP (calculated)

9.062

GRAVY (calculated)

-0.639

Length

397 amino acids

Sequence
(BLAST)

001: MDGGREQQAP PESQPGKNLI KIPSYQEVFG TGASTSSSKP PSYNPPVATS AAAAASSSSS SSGSFSQAFS FLKSSEFYSP PPPPPPQPTT TPRPTQASPS
101: APTPQSKNSI LVSHRQRGNP LLKHIRNARW TFADVVPDYV LGQSSCALYL SIRYHLLHPD YLYYRIRELQ KNFRLRVILC HVDVEDVIKP LHEITRTALL
201: HDCTLLCGWS LEECGRYLET IKVYENKPAD SIREHMDNDY LSRLTHGLTS IRHVNKTDVV TLGSSFGSLS QIMNGSMDEL ARCPGIGERK VRRLYDTFHE
301: PFKRVPARPR PNLVVPDTPD REKAKGQPSS TDGSSLQDAV EKPDASKKTK KGSDVRSALT VAFAKYSEKI RSQGRDAPNE AGESTGGSTV EAERAGD

Best Arabidopsis Sequence Match ( AT3G05210.1 )
(BLAST)

001: MANEDDDGEK SRSLHQQIAR KPKTQIVIGV PSYQEVLESS QTKSTPPSLF KPSQSFSQAF AFVKSSDVYS PPPPSSAAAS SSQPSGASQV PHSSSQTHQT
101: DGASSSSTPV ATGSVPSNTT QNRNAILVSH RQKGNPLLKH IRNVKWVFSD IIPDYVLGQN SCALYLSLRY HLLHPDYLYF RIRELQKNFK LSVVLCHVDV
201: EDTVKPLLEV TKTALLHDCT LLCAWSMTEC ARYLETIKVY ENKPADLIQG QMDTDYLSRL NHSLTSIRHV NKSDVVTLGS TFGSLAHIID ASMEDLARCP
301: GIGERKVKRL YDTFHEPFKR ATSSYPSVVE PPIPEAPVEK DVNSEEPVEE DEDFVEDSRK RKKKEPEPEK TVKTALSAVF ARYSDRLSKK KEKQKEKDTT
401: TASDAETHQN

Arabidopsis Description

ERCC1DNA excision repair protein ERCC-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9MA98]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.