Factsheet for Os10t0518900-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER91361	Sorghum	nucleus	81.4	79.35
Zm00001d032439_P002	Maize	nucleus	80.62	78.59
TraesCS1B01G199000.1	Wheat	nucleus	78.81	78.41
TraesCS1A01G182000.1	Wheat	nucleus	77.78	77.58
HORVU1Hr1G048250.1	Barley	nucleus	78.04	77.44
TraesCS1D01G185100.1	Wheat	nucleus	77.0	76.8
KRG92823	Soybean	endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, plastid, vacuole	41.86	62.31
GSMUA_Achr11P...	Banana	nucleus	61.76	59.01
PGSC0003DMT400063395	Potato	nucleus	58.14	57.4
VIT_14s0128g00150.t01	Wine grape	nucleus	58.91	57.29
Solyc03g115580.2.1	Tomato	nucleus	57.11	56.67
KRH33973	Soybean	nucleus	56.33	54.77
Bra039453.1-P	Field mustard	nucleus	52.97	51.51
CDY27786	Canola	nucleus	53.23	51.37
CDY05146	Canola	nucleus	52.45	51.26
AT3G05210.1	Thale cress	nucleus	52.45	49.51

Protein Annotations

Gene3D:1.10.150.20	MapMan:14.6.4.2	Gene3D:3.40.50.10130	EntrezGene:4349131	ProteinID:ABB47891.1	EMBL:AK070764
ProteinID:BAF26991.1	ProteinID:BAT11682.1	InterPro:ERCC1/RAD10/SWI10	GO:GO:0000003	GO:GO:0000014	GO:GO:0000110
GO:GO:0000710	GO:GO:0000724	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003684
GO:GO:0003697	GO:GO:0003824	GO:GO:0004518	GO:GO:0004519	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006259	GO:GO:0006281
GO:GO:0006294	GO:GO:0006296	GO:GO:0006312	GO:GO:0006950	GO:GO:0007049	GO:GO:0008150
GO:GO:0008152	GO:GO:0009628	GO:GO:0009987	GO:GO:0010213	GO:GO:0010224	GO:GO:0010332
GO:GO:0016043	GO:GO:0016787	GO:GO:0017108	GO:GO:0070522	GO:GO:0070914	GO:GO:0090305
EnsemblPlantsGene:Os10g0518900	EnsemblPlants:Os10t0518900-01	PFAM:PD013585	PFAM:PF03834	PFAM:PF12826	UniProt:Q337B1
InterPro:Restrct_endonuc-II-like	InterPro:RuvA_2-like	SUPFAM:SSF47781	SUPFAM:SSF52980	TIGRFAMs:TIGR00597	UniParc:UPI00005E1F61
RefSeq:XP_015612964.1	SEG:seg	:	:	:	:

Description

ERCC1 (Rad10), ERCC1, Rad10Similar to DNA excision repair protein ERCC-1 (EC 3.1.-.-) (AtERCC1) (AtRAD10) (Ultraviolet hypersensitive 7). (Os10t0518900-01)

Coordinates

chr10:-:20070802..20074175

Molecular Weight (calculated)

43086.5 Da

IEP (calculated)

8.895

GRAVY (calculated)

-0.705

Length

387 amino acids

Sequence
(BLAST)

001: MDGQWEEPQH AGRRRRQPEP GKNLIKIPSY QEVFGSGASS SAAPPSYNPP PTTAASSSSS SSSFSQAFSF LKSTEFYSPP PPPPQTTTPR PPQASSAAQA
101: PKNAILVSHR QKGNPLLKHI RNARWTYADI VPDYVLGQSS CALYISLRYH LLHPDYLYYR IRELQKNFKL RVILCHIDVE DVVKPLHEVT RTSLLHDCTL
201: LCGWSLEECG RYLETIKVYE NKSADSIREH MDNDYLSRLT HALTSIRHVN KTDVVTLGSS FGSLSQVMNA SMEELARCPG IGERKVKRLH DTFHEPFKRV
301: SSRPNIVVPD TPDREKASGQ PSSTNDGAQD AVEKPDASVN KKSSNVRSAL TEAFAKYSEK IRNQNRDSTN VAGEGTSKST MGDEKDQ

Best Arabidopsis Sequence Match ( AT3G05210.1 )
(BLAST)

001: MANEDDDGEK SRSLHQQIAR KPKTQIVIGV PSYQEVLESS QTKSTPPSLF KPSQSFSQAF AFVKSSDVYS PPPPSSAAAS SSQPSGASQV PHSSSQTHQT
101: DGASSSSTPV ATGSVPSNTT QNRNAILVSH RQKGNPLLKH IRNVKWVFSD IIPDYVLGQN SCALYLSLRY HLLHPDYLYF RIRELQKNFK LSVVLCHVDV
201: EDTVKPLLEV TKTALLHDCT LLCAWSMTEC ARYLETIKVY ENKPADLIQG QMDTDYLSRL NHSLTSIRHV NKSDVVTLGS TFGSLAHIID ASMEDLARCP
301: GIGERKVKRL YDTFHEPFKR ATSSYPSVVE PPIPEAPVEK DVNSEEPVEE DEDFVEDSRK RKKKEPEPEK TVKTALSAVF ARYSDRLSKK KEKQKEKDTT
401: TASDAETHQN

Arabidopsis Description

ERCC1DNA excision repair protein ERCC-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9MA98]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.