Factsheet for Bra039453.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY05146	Canola	nucleus	93.22	93.69
AT3G05210.1	Thale cress	nucleus	81.41	79.02
KRH33973	Soybean	nucleus	61.31	61.31
VIT_14s0128g00150.t01	Wine grape	nucleus	61.31	61.31
KRG92823	Soybean	endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, plastid, vacuole	39.95	61.15
Solyc03g115580.2.1	Tomato	nucleus	58.79	60.0
PGSC0003DMT400063395	Potato	nucleus	58.79	59.69
Os10t0518900-01	Rice	nucleus	51.51	52.97
EER91361	Sorghum	nucleus	52.01	52.14
TraesCS1A01G182000.1	Wheat	nucleus	50.0	51.29
GSMUA_Achr11P...	Banana	nucleus	52.01	51.11
HORVU1Hr1G048250.1	Barley	nucleus	49.75	50.77
TraesCS1B01G199000.1	Wheat	nucleus	49.5	50.64
TraesCS1D01G185100.1	Wheat	nucleus	49.25	50.52
Zm00001d032439_P002	Maize	nucleus	50.0	50.13

Protein Annotations

Gene3D:1.10.150.20	MapMan:14.6.4.2	Gene3D:3.40.50.10130	EnsemblPlantsGene:Bra039453	EnsemblPlants:Bra039453.1	EnsemblPlants:Bra039453.1-P
InterPro:ERCC1/RAD10/SWI10	GO:GO:0000724	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003684
GO:GO:0003824	GO:GO:0004518	GO:GO:0004519	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006259	GO:GO:0006281	GO:GO:0006294
GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009628	GO:GO:0009987	GO:GO:0010213
GO:GO:0010224	GO:GO:0010332	GO:GO:0016043	GO:GO:0016787	GO:GO:0017108	GO:GO:0090305
UniProt:M4FED2	PFAM:PD013585	PFAM:PF03834	PFAM:PF14520	PANTHER:PTHR12749	InterPro:Restrct_endonuc-II-like
InterPro:RuvA_2-like	SUPFAM:SSF47781	SUPFAM:SSF52980	TIGRFAMs:TIGR00597	UniParc:UPI000254748E	SEG:seg

Description

AT3G05210 (E=1e-172) ERCC1, UVR7 | ERCC1; 5'-flap endonuclease

Coordinates

chrA05:-:23397510..23399620

Molecular Weight (calculated)

44419.3 Da

IEP (calculated)

7.126

GRAVY (calculated)

-0.545

Length

398 amino acids

Sequence
(BLAST)

001: MANEDDDGEK SRGTPQQIGN KPKTQIVIGV PSYQEVVESS QTKSTPPSLF QPSQTFSQAF AFVKSSDVYS APPPTSSSSG ASHVPSTSQT PQTDVASSSS
101: STPPVATGSL STNTTQPRNA ILVSNRQKGN PLLKHIRNVK WVFSDIIPDY LLGQTTCALY LSLRYHLLHP DYLYFRIREL QKNFKLRVVL CHVDVEDSVK
201: PLLEVTKTAL LHDCTLLCAW SLTECARYLE TIKVYENKPA DLIQGQMDTD YLSRLNHSLT SIRHVNKSDV VTLGSTFGSL AHIMDASMED LARCPGIGER
301: KVKRLYDTFH EPFKRAASSY PSVIEPTVTE TEVHKDVNSE EPVVEADEDF VEDSRKRKKK EPEKSVKTAL STVFARYSDK LCKKKEKDTR TESDAETH

Best Arabidopsis Sequence Match ( AT3G05210.1 )
(BLAST)

001: MANEDDDGEK SRSLHQQIAR KPKTQIVIGV PSYQEVLESS QTKSTPPSLF KPSQSFSQAF AFVKSSDVYS PPPPSSAAAS SSQPSGASQV PHSSSQTHQT
101: DGASSSSTPV ATGSVPSNTT QNRNAILVSH RQKGNPLLKH IRNVKWVFSD IIPDYVLGQN SCALYLSLRY HLLHPDYLYF RIRELQKNFK LSVVLCHVDV
201: EDTVKPLLEV TKTALLHDCT LLCAWSMTEC ARYLETIKVY ENKPADLIQG QMDTDYLSRL NHSLTSIRHV NKSDVVTLGS TFGSLAHIID ASMEDLARCP
301: GIGERKVKRL YDTFHEPFKR ATSSYPSVVE PPIPEAPVEK DVNSEEPVEE DEDFVEDSRK RKKKEPEPEK TVKTALSAVF ARYSDRLSKK KEKQKEKDTT
401: TASDAETHQN

Arabidopsis Description

ERCC1DNA excision repair protein ERCC-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9MA98]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.