Factsheet for TraesCS1D01G185100.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
ChloroP:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G182000.1	Wheat	nucleus	98.2	98.2
TraesCS1B01G199000.1	Wheat	nucleus	98.2	97.94
HORVU1Hr1G048250.1	Barley	nucleus	96.39	95.9
Os10t0518900-01	Rice	nucleus	76.8	77.0
EER91361	Sorghum	nucleus	78.35	76.57
Zm00001d032439_P002	Maize	nucleus	75.52	73.8
KRG92823	Soybean	endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, plastid, vacuole	40.46	60.38
PGSC0003DMT400063395	Potato	nucleus	57.99	57.4
Solyc03g115580.2.1	Tomato	nucleus	56.7	56.41
GSMUA_Achr11P...	Banana	nucleus	58.25	55.8
VIT_14s0128g00150.t01	Wine grape	nucleus	56.7	55.28
KRH33973	Soybean	nucleus	54.64	53.27
CDY27786	Canola	nucleus	51.55	49.88
CDY05146	Canola	nucleus	50.52	49.49
Bra039453.1-P	Field mustard	nucleus	50.52	49.25
AT3G05210.1	Thale cress	nucleus	51.29	48.54

Protein Annotations

Gene3D:1.10.150.20	MapMan:14.6.4.2	Gene3D:3.40.50.10130	InterPro:ERCC1/RAD10/SWI10	GO:GO:0000724	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003684	GO:GO:0003824	GO:GO:0004518	GO:GO:0004519
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006259	GO:GO:0006281	GO:GO:0006294	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152
GO:GO:0009628	GO:GO:0009987	GO:GO:0010213	GO:GO:0010224	GO:GO:0010332	GO:GO:0016043
GO:GO:0016787	GO:GO:0017108	PFAM:PD013585	PFAM:PF03834	PFAM:PF14520	PANTHER:PTHR12749
InterPro:Restrct_endonuc-II-like	InterPro:RuvA_2-like	SUPFAM:SSF47781	SUPFAM:SSF52980	TIGRFAMs:TIGR00597	EnsemblPlantsGene:TraesCS1D01G185100
EnsemblPlants:TraesCS1D01G185100.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr1D:-:255834334..255837407

Molecular Weight (calculated)

42650.2 Da

IEP (calculated)

8.913

GRAVY (calculated)

-0.614

Length

388 amino acids

Sequence
(BLAST)

001: MDGEQGRQRP DSGKNLIKIP SYQEVFGNGA AAPSSSSTPP SYNPPLPSAA AAAAGSSSSS SFSEAFSFLK SSEFYSPPPP PLQPSTAPRP PLAGATTTPS
101: QSKNAILVSN RQKGNPLLKH IRNARWTFAD IVPDYVIGQS SCALYISLRY HLLHPDYLYY RIRELQKNFK LRVILCHIDI EDVVKPLHEV TRTSLLHDCT
201: LLCGWSLEEC GRYLETIKVF ENKPADSIRE HTDNDYLSRF THALTSIRRV NRTDVITLGS SFGSLSRIMD ASMEELARCP GIGERKVKRL HDTFHEPFKR
301: VTPRPNLVVP DTPDREKASG QPSSTNDGTP EKPGTSKNKK GPDVKSALTA AFAKYSEKIR SQGHEAAHEG GEGPSSSTME GDKTKQLD

Best Arabidopsis Sequence Match ( AT3G05210.1 )
(BLAST)

001: MANEDDDGEK SRSLHQQIAR KPKTQIVIGV PSYQEVLESS QTKSTPPSLF KPSQSFSQAF AFVKSSDVYS PPPPSSAAAS SSQPSGASQV PHSSSQTHQT
101: DGASSSSTPV ATGSVPSNTT QNRNAILVSH RQKGNPLLKH IRNVKWVFSD IIPDYVLGQN SCALYLSLRY HLLHPDYLYF RIRELQKNFK LSVVLCHVDV
201: EDTVKPLLEV TKTALLHDCT LLCAWSMTEC ARYLETIKVY ENKPADLIQG QMDTDYLSRL NHSLTSIRHV NKSDVVTLGS TFGSLAHIID ASMEDLARCP
301: GIGERKVKRL YDTFHEPFKR ATSSYPSVVE PPIPEAPVEK DVNSEEPVEE DEDFVEDSRK RKKKEPEPEK TVKTALSAVF ARYSDRLSKK KEKQKEKDTT
401: TASDAETHQN

Arabidopsis Description

ERCC1DNA excision repair protein ERCC-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9MA98]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.