CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY05146	Canola	nucleus	88.53	89.65
AT3G05210.1	Thale cress	nucleus	80.8	79.02
KRH33973	Soybean	nucleus	61.35	61.81
VIT_14s0128g00150.t01	Wine grape	nucleus	60.35	60.8
KRG92823	Soybean	endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, plastid, vacuole	39.15	60.38
PGSC0003DMT400063395	Potato	nucleus	58.85	60.2
Solyc03g115580.2.1	Tomato	nucleus	57.61	59.23
Os10t0518900-01	Rice	nucleus	51.37	53.23
TraesCS1A01G182000.1	Wheat	nucleus	50.87	52.58
EER91361	Sorghum	nucleus	51.87	52.39
HORVU1Hr1G048250.1	Barley	nucleus	50.62	52.05
TraesCS1B01G199000.1	Wheat	nucleus	50.37	51.93
TraesCS1D01G185100.1	Wheat	nucleus	49.88	51.55
GSMUA_Achr11P...	Banana	nucleus	51.37	50.86
Zm00001d032439_P002	Maize	nucleus	50.12	50.63

Protein Annotations

Gene3D:1.10.150.20	MapMan:14.6.4.2	Gene3D:3.40.50.10130	GO:A0A078GQT9	UniProt:A0A078GQT9	EnsemblPlants:CDY27786
ProteinID:CDY27786	ProteinID:CDY27786.1	InterPro:ERCC1/RAD10/SWI10	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003684	GO:GO:0003824	GO:GO:0004518	GO:GO:0004519	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006259	GO:GO:0006281
GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016787	GO:GO:0090305
EnsemblPlantsGene:GSBRNA2T00038592001	PFAM:PD013585	PFAM:PF03834	PFAM:PF14520	PANTHER:PTHR12749	InterPro:Restrct_endonuc-II-like
InterPro:RuvA_2-like	SUPFAM:SSF47781	SUPFAM:SSF52980	TIGRFAMs:TIGR00597	UniParc:UPI0004EF3466	SEG:seg

Description

BnaA05g31950DBnaA05g31950D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GQT9]

Coordinates

chrLK032209:-:409822..412081

Molecular Weight (calculated)

44897.0 Da

IEP (calculated)

6.900

GRAVY (calculated)

-0.559

Length

401 amino acids

Sequence
(BLAST)

001: MANEDDEVEK SRGTPQQIGN KPKTQIVIGV PSYQEVVESS QTKSTPPSLF KPSQTFSQAF AFVKSSDVYS APPPPPPLTS SSGASHVPST SQTPQTDVAS
101: SSTPPVATGS LSTNTTQPRN AILVSNRQKG NPLLKHIRNV KWVFSEIIPD YLLGQTTCAL YLSLRYHLLH PDYLYFRIRE LQKNFKLRVV LCHVDVEDSV
201: KPLLEVTKTA LLHDCTLLCA WSLTECARYL ETIKVYENKP ADLIQGQMDT DYLSRLNHSL TSIRHVNKSD VVTLGSTFGS LAHIMDASME DLARCPGIGE
301: RKVKRLYDTF HEPFKRAASS YPSVVEPTVT ETEVQKDVNS EEPVVEEDED FVEDSRKRKK KEPEKSVKTA LSTVFARYSD KLCKKKEKDT RTDSDAETHQ
401: D

Best Arabidopsis Sequence Match ( AT3G05210.1 )
(BLAST)

001: MANEDDDGEK SRSLHQQIAR KPKTQIVIGV PSYQEVLESS QTKSTPPSLF KPSQSFSQAF AFVKSSDVYS PPPPSSAAAS SSQPSGASQV PHSSSQTHQT
101: DGASSSSTPV ATGSVPSNTT QNRNAILVSH RQKGNPLLKH IRNVKWVFSD IIPDYVLGQN SCALYLSLRY HLLHPDYLYF RIRELQKNFK LSVVLCHVDV
201: EDTVKPLLEV TKTALLHDCT LLCAWSMTEC ARYLETIKVY ENKPADLIQG QMDTDYLSRL NHSLTSIRHV NKSDVVTLGS TFGSLAHIID ASMEDLARCP
301: GIGERKVKRL YDTFHEPFKR ATSSYPSVVE PPIPEAPVEK DVNSEEPVEE DEDFVEDSRK RKKKEPEPEK TVKTALSAVF ARYSDRLSKK KEKQKEKDTT
401: TASDAETHQN

Arabidopsis Description

ERCC1DNA excision repair protein ERCC-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9MA98]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.