CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra039453.1-P	Field mustard	nucleus	93.69	93.22
CDY27786	Canola	nucleus	89.65	88.53
AT3G05210.1	Thale cress	nucleus	82.83	80.0
KRG92823	Soybean	endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, plastid, vacuole	40.4	61.54
VIT_14s0128g00150.t01	Wine grape	nucleus	61.11	60.8
KRH33973	Soybean	nucleus	60.86	60.55
Solyc03g115580.2.1	Tomato	nucleus	57.58	58.46
PGSC0003DMT400063395	Potato	nucleus	57.83	58.42
Os10t0518900-01	Rice	nucleus	51.26	52.45
GSMUA_Achr11P...	Banana	nucleus	53.03	51.85
EER91361	Sorghum	nucleus	51.77	51.64
TraesCS1A01G182000.1	Wheat	nucleus	50.25	51.29
TraesCS1B01G199000.1	Wheat	nucleus	49.75	50.64
TraesCS1D01G185100.1	Wheat	nucleus	49.49	50.52
HORVU1Hr1G048250.1	Barley	nucleus	49.49	50.26
Zm00001d032439_P002	Maize	nucleus	50.0	49.87

Protein Annotations

Gene3D:1.10.150.20	MapMan:14.6.4.2	Gene3D:3.40.50.10130	GO:A0A078EV82	EnsemblPlants:CDY05146	ProteinID:CDY05146
ProteinID:CDY05146.1	InterPro:ERCC1/RAD10/SWI10	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003684
GO:GO:0003824	GO:GO:0004518	GO:GO:0004519	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006259	GO:GO:0006281	GO:GO:0006950
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016787	GO:GO:0090305	EnsemblPlantsGene:GSBRNA2T00119943001
PFAM:PD013585	PFAM:PF03834	PFAM:PF14520	PANTHER:PTHR12749	InterPro:Restrct_endonuc-II-like	InterPro:RuvA_2-like
SUPFAM:SSF47781	SUPFAM:SSF52980	TIGRFAMs:TIGR00597	UniParc:UPI0004EE4DAD	:	:

Description

BnaC05g46570D

Coordinates

chrLK031960:+:43787..46058

Molecular Weight (calculated)

44108.0 Da

IEP (calculated)

7.309

GRAVY (calculated)

-0.543

Length

396 amino acids

Sequence
(BLAST)

001: MANEDDDGEK SRGTPQQIGN KPKTQIVIGV PSYQEVVESS QTKSTPPSLF KPSQTFSQAF AFVKSSDVYS APPPLTSSSG ASHVPSTSQT PQTDVASSST
101: PVATGSLSSN TTQPRNAILV SNRQKGNPLL KHIRNVKWVF SEIIPDYLLG QSTCALYLSL RYHLLHPDYL YFRIRELQKN FKLRVVLCHV DVEDSVKPLL
201: EVTKTALLHD CTLLCAWSLT ECARYLETIK VYENKPADLI QGQMDTDYLS RLNHSLTSIR HVNKSDVVTL GSTFGSLAHI MDASMEDLAR CPGIGERKVK
301: RLYDTFHEPF KRAASSYPSV IEPTAPETEV QKDVNSEEPA EADEDFVEGS RKRKKMEPEK SVKTALSTVF ARYSDKLCKK KEKGTRTDSD AETHQD

Best Arabidopsis Sequence Match ( AT3G05210.1 )
(BLAST)

001: MANEDDDGEK SRSLHQQIAR KPKTQIVIGV PSYQEVLESS QTKSTPPSLF KPSQSFSQAF AFVKSSDVYS PPPPSSAAAS SSQPSGASQV PHSSSQTHQT
101: DGASSSSTPV ATGSVPSNTT QNRNAILVSH RQKGNPLLKH IRNVKWVFSD IIPDYVLGQN SCALYLSLRY HLLHPDYLYF RIRELQKNFK LSVVLCHVDV
201: EDTVKPLLEV TKTALLHDCT LLCAWSMTEC ARYLETIKVY ENKPADLIQG QMDTDYLSRL NHSLTSIRHV NKSDVVTLGS TFGSLAHIID ASMEDLARCP
301: GIGERKVKRL YDTFHEPFKR ATSSYPSVVE PPIPEAPVEK DVNSEEPVEE DEDFVEDSRK RKKKEPEPEK TVKTALSAVF ARYSDRLSKK KEKQKEKDTT
401: TASDAETHQN

Arabidopsis Description

ERCC1DNA excision repair protein ERCC-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9MA98]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.