CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, endoplasmic reticulum, vacuole, mitochondrion, plastid, plasma membrane, golgi, nucleus

Predictor Summary:

plastid 4
nucleus 3
mitochondrion 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion, nucleus, plastid, secretory
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	plastid
EpiLoc:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus, plastid
Predotar:	secretory
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH33973	Soybean	nucleus	77.69	50.75
PGSC0003DMT400063395	Potato	nucleus	68.46	45.41
VIT_14s0128g00150.t01	Wine grape	nucleus	69.23	45.23
Solyc03g115580.2.1	Tomato	nucleus	67.69	45.13
Os10t0518900-01	Rice	nucleus	62.31	41.86
GSMUA_Achr11P...	Banana	nucleus	64.62	41.48
EER91361	Sorghum	nucleus	62.31	40.81
TraesCS1A01G182000.1	Wheat	nucleus	60.77	40.72
TraesCS1D01G185100.1	Wheat	nucleus	60.38	40.46
CDY05146	Canola	nucleus	61.54	40.4
TraesCS1B01G199000.1	Wheat	nucleus	60.38	40.36
HORVU1Hr1G048250.1	Barley	nucleus	60.38	40.26
Zm00001d032439_P002	Maize	nucleus	61.15	40.05
Bra039453.1-P	Field mustard	nucleus	61.15	39.95
CDY27786	Canola	nucleus	60.38	39.15
AT3G05210.1	Thale cress	nucleus	61.54	39.02

Protein Annotations

Gene3D:1.10.150.20	MapMan:14.6.4.2	Gene3D:3.40.50.10130	EMBL:ACUP02012768	InterPro:ERCC1/RAD10/SWI10	EnsemblPlantsGene:GLYMA_20G232000
GO:GO:0000003	GO:GO:0000014	GO:GO:0000110	GO:GO:0000710	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003684	GO:GO:0003697	GO:GO:0003824	GO:GO:0004518	GO:GO:0004519
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006259	GO:GO:0006281	GO:GO:0006296	GO:GO:0006312	GO:GO:0006950	GO:GO:0007049
GO:GO:0008150	GO:GO:0008152	GO:GO:0009628	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787
GO:GO:0070522	GO:GO:0070914	UniProt:K7N575	EnsemblPlants:KRG92823	ProteinID:KRG92823	ProteinID:KRG92823.1
PFAM:PD013585	PFAM:PF03834	PANTHER:PTHR12749	InterPro:Restrct_endonuc-II-like	InterPro:RuvA_2-like	SUPFAM:SSF47781
SUPFAM:SSF52980	TIGRFAMs:TIGR00597	UniParc:UPI0002965E7E	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr20:+:46554900..46557408

Molecular Weight (calculated)

29282.8 Da

IEP (calculated)

9.624

GRAVY (calculated)

-0.135

Length

260 amino acids

Sequence
(BLAST)

001: MSKIFSLLPH TLLGYVSSRI RGVSKGNPLL KHIRNVRWAF ADVVCDYLLG QSSCALYLSL RYHLLHPDYL FYRIRKLQKN FKLRVVLCHV GVEDVIKPLL
101: EVTKTALLHD CTLLCGWSLE ECGRYLETIK LTHALTTVRH VNKTDVVTLG TTFGYLCNIM GASMEDLARC PGIVGERKVK RLFDTFHEPF KHVESSRQAI
201: PETSVQNKPA SPKKELEVTV KSALSAAFAK YSGRVGKRKS TSQVEEKGES IISKESEAET

Best Arabidopsis Sequence Match ( AT3G05210.1 )
(BLAST)

001: MANEDDDGEK SRSLHQQIAR KPKTQIVIGV PSYQEVLESS QTKSTPPSLF KPSQSFSQAF AFVKSSDVYS PPPPSSAAAS SSQPSGASQV PHSSSQTHQT
101: DGASSSSTPV ATGSVPSNTT QNRNAILVSH RQKGNPLLKH IRNVKWVFSD IIPDYVLGQN SCALYLSLRY HLLHPDYLYF RIRELQKNFK LSVVLCHVDV
201: EDTVKPLLEV TKTALLHDCT LLCAWSMTEC ARYLETIKVY ENKPADLIQG QMDTDYLSRL NHSLTSIRHV NKSDVVTLGS TFGSLAHIID ASMEDLARCP
301: GIGERKVKRL YDTFHEPFKR ATSSYPSVVE PPIPEAPVEK DVNSEEPVEE DEDFVEDSRK RKKKEPEPEK TVKTALSAVF ARYSDRLSKK KEKQKEKDTT
401: TASDAETHQN

Arabidopsis Description

ERCC1DNA excision repair protein ERCC-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9MA98]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.