CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d032439_P002	Maize	nucleus	92.7	92.7
Os10t0518900-01	Rice	nucleus	79.35	81.4
HORVU1Hr1G048250.1	Barley	nucleus	77.83	79.23
TraesCS1B01G199000.1	Wheat	nucleus	77.08	78.66
TraesCS1A01G182000.1	Wheat	nucleus	76.83	78.61
TraesCS1D01G185100.1	Wheat	nucleus	76.57	78.35
KRG92823	Soybean	endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, plastid, vacuole	40.81	62.31
GSMUA_Achr11P...	Banana	nucleus	59.7	58.52
PGSC0003DMT400063395	Potato	nucleus	57.43	58.16
VIT_14s0128g00150.t01	Wine grape	nucleus	57.93	57.79
Solyc03g115580.2.1	Tomato	nucleus	55.67	56.67
KRH33973	Soybean	nucleus	55.92	55.78
Bra039453.1-P	Field mustard	nucleus	52.14	52.01
CDY27786	Canola	nucleus	52.39	51.87
CDY05146	Canola	nucleus	51.64	51.77
AT3G05210.1	Thale cress	nucleus	52.39	50.73

Protein Annotations

Gene3D:1.10.150.20	MapMan:14.6.4.2	Gene3D:3.40.50.10130	EntrezGene:8065686	UniProt:C5WVC6	EnsemblPlants:EER91361
ProteinID:EER91361	ProteinID:EER91361.1	InterPro:ERCC1/RAD10/SWI10	GO:GO:0000003	GO:GO:0000014	GO:GO:0000110
GO:GO:0000710	GO:GO:0000724	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003684
GO:GO:0003697	GO:GO:0003824	GO:GO:0004518	GO:GO:0004519	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006259	GO:GO:0006281
GO:GO:0006294	GO:GO:0006296	GO:GO:0006312	GO:GO:0006950	GO:GO:0007049	GO:GO:0008150
GO:GO:0008152	GO:GO:0009628	GO:GO:0009987	GO:GO:0010213	GO:GO:0010224	GO:GO:0010332
GO:GO:0016043	GO:GO:0016787	GO:GO:0017108	GO:GO:0070522	GO:GO:0070914	PFAM:PD013585
PFAM:PF03834	PFAM:PF14520	PANTHER:PTHR12749	InterPro:Restrct_endonuc-II-like	InterPro:RuvA_2-like	EnsemblPlantsGene:SORBI_3001G192900
SUPFAM:SSF47781	SUPFAM:SSF52980	TIGRFAMs:TIGR00597	UniParc:UPI0001A823B7	RefSeq:XP_002464363.1	SEG:seg

Description

hypothetical protein

Coordinates

chr1:+:17141348..17144287

Molecular Weight (calculated)

43673.3 Da

IEP (calculated)

8.894

GRAVY (calculated)

-0.621

Length

397 amino acids

Sequence
(BLAST)

001: MDGGREQQAP PEGQPGKNLI KIPSYQEVFG TGASSSSSKP ASYNPPLASS GGTAAAAASS SSSSSGSFSQ AFSFLKSSEF YSPPPPPPPQ PTTTTPRPPQ
101: ASPSAPTRQS KNAILVSHRQ RGNPLLKHIR NARWTFADVV PDYVLGQSSC ALYLSIRYHL LHPDYLYYRI RELQKNFRLR VILCHVDVED VIKPLHEITR
201: TALLHDCTLL CGWSLEECGR YLETIKVYEN KPADIIREHM DNDYLSRLSH SLTSIRHVNK TDVVTLGSSF GSLSQIMNAS MEELARCPGI GERKVKRLYD
301: TFHEPFKRVS ARPNLVVPDT PDREKAKGQP SSTDDSLQDA VEKPDAPKKK KGSDVRSALT AAFAKYSEKI RSQGHDAANE AGESTSSSTM EADRARD

Best Arabidopsis Sequence Match ( AT3G05210.1 )
(BLAST)

001: MANEDDDGEK SRSLHQQIAR KPKTQIVIGV PSYQEVLESS QTKSTPPSLF KPSQSFSQAF AFVKSSDVYS PPPPSSAAAS SSQPSGASQV PHSSSQTHQT
101: DGASSSSTPV ATGSVPSNTT QNRNAILVSH RQKGNPLLKH IRNVKWVFSD IIPDYVLGQN SCALYLSLRY HLLHPDYLYF RIRELQKNFK LSVVLCHVDV
201: EDTVKPLLEV TKTALLHDCT LLCAWSMTEC ARYLETIKVY ENKPADLIQG QMDTDYLSRL NHSLTSIRHV NKSDVVTLGS TFGSLAHIID ASMEDLARCP
301: GIGERKVKRL YDTFHEPFKR ATSSYPSVVE PPIPEAPVEK DVNSEEPVEE DEDFVEDSRK RKKKEPEPEK TVKTALSAVF ARYSDRLSKK KEKQKEKDTT
401: TASDAETHQN

Arabidopsis Description

ERCC1DNA excision repair protein ERCC-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9MA98]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.