Factsheet for HORVU1Hr1G048250.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
ChloroP:	plastid
MultiLoc:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G182000.1	Wheat	nucleus	96.67	97.16
TraesCS1B01G199000.1	Wheat	nucleus	96.67	96.92
TraesCS1D01G185100.1	Wheat	nucleus	95.9	96.39
Os10t0518900-01	Rice	nucleus	77.44	78.04
EER91361	Sorghum	nucleus	79.23	77.83
Zm00001d032439_P002	Maize	nucleus	77.18	75.82
KRG92823	Soybean	endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, plastid, vacuole	40.26	60.38
PGSC0003DMT400063395	Potato	nucleus	57.69	57.4
GSMUA_Achr11P...	Banana	nucleus	58.72	56.54
Solyc03g115580.2.1	Tomato	nucleus	56.41	56.41
VIT_14s0128g00150.t01	Wine grape	nucleus	56.67	55.53
KRH33973	Soybean	nucleus	55.38	54.27
CDY27786	Canola	nucleus	52.05	50.62
Bra039453.1-P	Field mustard	nucleus	50.77	49.75
CDY05146	Canola	nucleus	50.26	49.49
AT3G05210.1	Thale cress	nucleus	51.28	48.78

Protein Annotations

Gene3D:1.10.150.20	MapMan:14.6.4.2	Gene3D:3.40.50.10130	UniProt:A0A287FG23	InterPro:ERCC1/RAD10/SWI10	GO:GO:0000724
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003684	GO:GO:0003824	GO:GO:0004518
GO:GO:0004519	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006259	GO:GO:0006281	GO:GO:0006294	GO:GO:0006950	GO:GO:0008150
GO:GO:0008152	GO:GO:0009628	GO:GO:0009987	GO:GO:0010213	GO:GO:0010224	GO:GO:0010332
GO:GO:0016043	GO:GO:0016787	GO:GO:0017108	GO:GO:0090305	EnsemblPlantsGene:HORVU1Hr1G048250	EnsemblPlants:HORVU1Hr1G048250.1
PFAM:PD013585	PFAM:PF03834	PFAM:PF14520	PANTHER:PTHR12749	InterPro:Restrct_endonuc-II-like	InterPro:RuvA_2-like
SUPFAM:SSF47781	SUPFAM:SSF52980	TIGRFAMs:TIGR00597	UniParc:UPI000B473C68	SEG:seg	:

Description

No Description!

Coordinates

chrchr1H:-:355818734..355827510

Molecular Weight (calculated)

42902.3 Da

IEP (calculated)

9.081

GRAVY (calculated)

-0.641

Length

390 amino acids

Sequence
(BLAST)

001: RAMDGEQGRQ RPDSGKNLIK IPSYQEVFGN GAAASSSSST PSSYNPPLPS AAAAAAGSSS SSSFSEAFSF LKSSEFYSPP PPPPQPSTSP RPPLAGATTT
101: PSQSKNSILV SNRQKGNPLL KHIRNARWTF ADIVPDYVIG QSSCALYISL RYHLLHPDYL YYRIRELQKN FKLRVILCHI DIEDVVKPLH EITRTSLLHD
201: CTLLCGWSLE ECGRYLETIK VFENKPADSI REHTDNDYLS RFTHALTSIR RVNKTDVITL GSSFGSLSRI MDASMEELAR CPGIGERKVK RLHDTFHEPF
301: KRVTPRPNLV VPDTPDREKA SGQPSSTNDG TPEKSDTSKN KKGSDVKSAL TAAFAKYSEK VRSQGRDAAH EAGEGPSSST MEGDKTKQLD

Best Arabidopsis Sequence Match ( AT3G05210.1 )
(BLAST)

001: MANEDDDGEK SRSLHQQIAR KPKTQIVIGV PSYQEVLESS QTKSTPPSLF KPSQSFSQAF AFVKSSDVYS PPPPSSAAAS SSQPSGASQV PHSSSQTHQT
101: DGASSSSTPV ATGSVPSNTT QNRNAILVSH RQKGNPLLKH IRNVKWVFSD IIPDYVLGQN SCALYLSLRY HLLHPDYLYF RIRELQKNFK LSVVLCHVDV
201: EDTVKPLLEV TKTALLHDCT LLCAWSMTEC ARYLETIKVY ENKPADLIQG QMDTDYLSRL NHSLTSIRHV NKSDVVTLGS TFGSLAHIID ASMEDLARCP
301: GIGERKVKRL YDTFHEPFKR ATSSYPSVVE PPIPEAPVEK DVNSEEPVEE DEDFVEDSRK RKKKEPEPEK TVKTALSAVF ARYSDRLSKK KEKQKEKDTT
401: TASDAETHQN

Arabidopsis Description

ERCC1DNA excision repair protein ERCC-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9MA98]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.