CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG92823	Soybean	endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, plastid, vacuole	50.75	77.69
VIT_14s0128g00150.t01	Wine grape	nucleus	65.33	65.33
PGSC0003DMT400063395	Potato	nucleus	61.56	62.5
CDY27786	Canola	nucleus	61.81	61.35
Bra039453.1-P	Field mustard	nucleus	61.31	61.31
Solyc03g115580.2.1	Tomato	nucleus	60.05	61.28
CDY05146	Canola	nucleus	60.55	60.86
AT3G05210.1	Thale cress	nucleus	61.81	60.0
Os10t0518900-01	Rice	nucleus	54.77	56.33
EER91361	Sorghum	nucleus	55.78	55.92
GSMUA_Achr11P...	Banana	nucleus	56.78	55.8
Zm00001d032439_P002	Maize	nucleus	55.28	55.42
HORVU1Hr1G048250.1	Barley	nucleus	54.27	55.38
TraesCS1A01G182000.1	Wheat	nucleus	53.77	55.15
TraesCS1B01G199000.1	Wheat	nucleus	53.52	54.76
TraesCS1D01G185100.1	Wheat	nucleus	53.27	54.64

Protein Annotations

Gene3D:1.10.150.20	EntrezGene:100777022	MapMan:14.6.4.2	Gene3D:3.40.50.10130	EMBL:ACUP02006567	InterPro:ERCC1/RAD10/SWI10
EnsemblPlantsGene:GLYMA_10G156300	GO:GO:0000003	GO:GO:0000014	GO:GO:0000110	GO:GO:0000710	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003684	GO:GO:0003697	GO:GO:0003824	GO:GO:0004518
GO:GO:0004519	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006259	GO:GO:0006281	GO:GO:0006296	GO:GO:0006312	GO:GO:0006950
GO:GO:0007049	GO:GO:0008150	GO:GO:0008152	GO:GO:0009628	GO:GO:0009987	GO:GO:0016043
GO:GO:0016787	GO:GO:0070522	GO:GO:0070914	UniProt:I1LBE3	EnsemblPlants:KRH33973	ProteinID:KRH33973
ProteinID:KRH33973.1	PFAM:PD013585	PFAM:PF03834	InterPro:Restrct_endonuc-II-like	InterPro:RuvA_2-like	SUPFAM:SSF47781
SUPFAM:SSF52980	TIGRFAMs:TIGR00597	UniParc:UPI000233CF22	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr10:-:39054278..39057039

Molecular Weight (calculated)

44731.0 Da

IEP (calculated)

8.198

GRAVY (calculated)

-0.570

Length

398 amino acids

Sequence
(BLAST)

001: MEKQNEEEEE QKKKKKSSVV IRIPSYQEVV ESSQAKSTPS SLFVPSQTFS EAFAFVKSSD FYSPPPKSRE TGQSDAPSST STPSPATAAA SSTIPSSQNR
101: NSILVSHRQC IILQKGNPLL KHIRNVRWAF ADVVCDYMLG QSSCALYLSL RYHLLHPDYL YYRIRELQKN FKLRVVLCHV DVEDVIKPLL EVTKTAMLHD
201: CTLLCGWSLE ECGRYLETIK VYENKPADII QGQMDTDYLS RLTHSLTTVR HVNKTDVVTL GTTFGSLSNI MGASMEDLAR CPGIGERKVK RLFDTFHEPF
301: KRVESSRQAI PETSVQNKPA SPESSIRNKA ESSSLIEDKQ EDTEDVSKRR KKEPEVTVKS ALSAAFAKYS GRVGKRKSTS QVEEKEESII SKESEAET

Best Arabidopsis Sequence Match ( AT3G05210.1 )
(BLAST)

001: MANEDDDGEK SRSLHQQIAR KPKTQIVIGV PSYQEVLESS QTKSTPPSLF KPSQSFSQAF AFVKSSDVYS PPPPSSAAAS SSQPSGASQV PHSSSQTHQT
101: DGASSSSTPV ATGSVPSNTT QNRNAILVSH RQKGNPLLKH IRNVKWVFSD IIPDYVLGQN SCALYLSLRY HLLHPDYLYF RIRELQKNFK LSVVLCHVDV
201: EDTVKPLLEV TKTALLHDCT LLCAWSMTEC ARYLETIKVY ENKPADLIQG QMDTDYLSRL NHSLTSIRHV NKSDVVTLGS TFGSLAHIID ASMEDLARCP
301: GIGERKVKRL YDTFHEPFKR ATSSYPSVVE PPIPEAPVEK DVNSEEPVEE DEDFVEDSRK RKKKEPEPEK TVKTALSAVF ARYSDRLSKK KEKQKEKDTT
401: TASDAETHQN

Arabidopsis Description

ERCC1DNA excision repair protein ERCC-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9MA98]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.