Factsheet for Solyc03g115580.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400063395	Potato	nucleus	94.1	93.62
KRG92823	Soybean	endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, plastid, vacuole	45.13	67.69
VIT_14s0128g00150.t01	Wine grape	nucleus	64.36	63.07
KRH33973	Soybean	nucleus	61.28	60.05
Bra039453.1-P	Field mustard	nucleus	60.0	58.79
CDY27786	Canola	nucleus	59.23	57.61
CDY05146	Canola	nucleus	58.46	57.58
TraesCS1B01G199000.1	Wheat	nucleus	57.18	57.33
Os10t0518900-01	Rice	nucleus	56.67	57.11
TraesCS1A01G182000.1	Wheat	nucleus	56.67	56.96
TraesCS1D01G185100.1	Wheat	nucleus	56.41	56.7
HORVU1Hr1G048250.1	Barley	nucleus	56.41	56.41
EER91361	Sorghum	nucleus	56.67	55.67
AT3G05210.1	Thale cress	nucleus	58.46	55.61
GSMUA_Achr11P...	Banana	nucleus	57.69	55.56
Zm00001d032439_P002	Maize	nucleus	55.13	54.16

Protein Annotations

Gene3D:1.10.150.20	MapMan:14.6.4.2	Gene3D:3.40.50.10130	InterPro:ERCC1/RAD10/SWI10	GO:GO:0000003	GO:GO:0000014
GO:GO:0000110	GO:GO:0000710	GO:GO:0000724	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003684	GO:GO:0003697	GO:GO:0003824	GO:GO:0004518	GO:GO:0004519	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006259
GO:GO:0006281	GO:GO:0006294	GO:GO:0006296	GO:GO:0006312	GO:GO:0006950	GO:GO:0007049
GO:GO:0008150	GO:GO:0008152	GO:GO:0009628	GO:GO:0009987	GO:GO:0010213	GO:GO:0010224
GO:GO:0010332	GO:GO:0016043	GO:GO:0016787	GO:GO:0017108	GO:GO:0070522	GO:GO:0070914
UniProt:K4BL60	PFAM:PD013585	PFAM:PF03834	InterPro:Restrct_endonuc-II-like	InterPro:RuvA_2-like	SUPFAM:SSF47781
SUPFAM:SSF52980	EnsemblPlantsGene:Solyc03g115580.2	EnsemblPlants:Solyc03g115580.2.1	TIGRFAMs:TIGR00597	UniParc:UPI000276896B	SEG:seg

Description

No Description!

Coordinates

chr3:-:65237026..65240910

Molecular Weight (calculated)

43594.3 Da

IEP (calculated)

8.062

GRAVY (calculated)

-0.615

Length

390 amino acids

Sequence
(BLAST)

001: MGDAEREGGE KKKSFVIQIP SYEEVMECSS QPKTASSSSS LFNPTPSFSQ AFKFVKNSEF YSPPPPSSSQ SATPRQVNSS HVTASSSSST PTPSSSANRN
101: AILVSNRQKG NPLLKHIRNV RWTFADIVCD YLLGPNTCAL YLSLRYHLLH PDYLYFRIRE LQKNFRLRII LCHVDVEDVM KPLLEVTRTS LLHDCTLLCG
201: WSLEECGRYL ETVKVYENKP ADLIQGQMDG DYLSRLNHAL TAIRHVNKTD VVTLGSTFGS LSHVMDASME DLARCPGIGE RKVKRLYDAF HEPFKREVPK
301: RQCIPETSVA NESHPGSSNT KEDEKEIVDT SNSAKKEPEV TVKSALSAAF AKYSHKITRK KNNKSREEEE GKCSTNEEAK TGDVNGSNNC

Best Arabidopsis Sequence Match ( AT3G05210.1 )
(BLAST)

001: MANEDDDGEK SRSLHQQIAR KPKTQIVIGV PSYQEVLESS QTKSTPPSLF KPSQSFSQAF AFVKSSDVYS PPPPSSAAAS SSQPSGASQV PHSSSQTHQT
101: DGASSSSTPV ATGSVPSNTT QNRNAILVSH RQKGNPLLKH IRNVKWVFSD IIPDYVLGQN SCALYLSLRY HLLHPDYLYF RIRELQKNFK LSVVLCHVDV
201: EDTVKPLLEV TKTALLHDCT LLCAWSMTEC ARYLETIKVY ENKPADLIQG QMDTDYLSRL NHSLTSIRHV NKSDVVTLGS TFGSLAHIID ASMEDLARCP
301: GIGERKVKRL YDTFHEPFKR ATSSYPSVVE PPIPEAPVEK DVNSEEPVEE DEDFVEDSRK RKKKEPEPEK TVKTALSAVF ARYSDRLSKK KEKQKEKDTT
401: TASDAETHQN

Arabidopsis Description

ERCC1DNA excision repair protein ERCC-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9MA98]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.