Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY05146 | Canola | nucleus | 80.0 | 82.83 |
| Bra039453.1-P | Field mustard | nucleus | 79.02 | 81.41 |
| CDY27786 | Canola | nucleus | 79.02 | 80.8 |
| VIT_14s0128g00150.t01 | Wine grape | nucleus | 61.22 | 63.07 |
| KRH33973 | Soybean | nucleus | 60.0 | 61.81 |
| KRG92823 | Soybean | endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, plastid, vacuole | 39.02 | 61.54 |
| PGSC0003DMT400063395 | Potato | nucleus | 56.59 | 59.18 |
| Solyc03g115580.2.1 | Tomato | nucleus | 55.61 | 58.46 |
| GSMUA_Achr11P... | Banana | nucleus | 52.2 | 52.84 |
| Os10t0518900-01 | Rice | nucleus | 49.51 | 52.45 |
| EER91361 | Sorghum | nucleus | 50.73 | 52.39 |
| TraesCS1A01G182000.1 | Wheat | nucleus | 49.27 | 52.06 |
| TraesCS1B01G199000.1 | Wheat | nucleus | 48.78 | 51.41 |
| TraesCS1D01G185100.1 | Wheat | nucleus | 48.54 | 51.29 |
| HORVU1Hr1G048250.1 | Barley | nucleus | 48.78 | 51.28 |
| Zm00001d032439_P002 | Maize | nucleus | 48.54 | 50.13 |
Protein Annotations
| Gene3D:1.10.150.20 | MapMan:14.6.4.2 | Gene3D:3.40.50.10130 | EntrezGene:819685 | ProteinID:AAF27027.1 | ProteinID:AEE74205.1 |
| EMBL:AF276082 | ArrayExpress:AT3G05210 | EnsemblPlantsGene:AT3G05210 | RefSeq:AT3G05210 | TAIR:AT3G05210 | RefSeq:AT3G05210-TAIR-G |
| EnsemblPlants:AT3G05210.1 | TAIR:AT3G05210.1 | EMBL:AY050335 | EMBL:AY088915 | EMBL:AY116935 | Symbol:ERCC1 |
| InterPro:ERCC1/RAD10/SWI10 | GO:GO:0000003 | GO:GO:0000014 | GO:GO:0000110 | GO:GO:0000710 | GO:GO:0000724 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003684 | GO:GO:0003697 | GO:GO:0003824 |
| GO:GO:0004518 | GO:GO:0004519 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006259 | GO:GO:0006281 | GO:GO:0006294 | GO:GO:0006296 |
| GO:GO:0006310 | GO:GO:0006312 | GO:GO:0006950 | GO:GO:0006974 | GO:GO:0007049 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009628 | GO:GO:0009987 | GO:GO:0010213 | GO:GO:0010224 | GO:GO:0010332 |
| GO:GO:0016043 | GO:GO:0016787 | GO:GO:0017108 | GO:GO:0070522 | GO:GO:0070914 | GO:GO:0090305 |
| RefSeq:NP_187172.1 | PFAM:PD013585 | PFAM:PF03834 | PFAM:PF14520 | PO:PO:0000013 | PO:PO:0000037 |
| PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 |
| PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 |
| PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 |
| PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 |
| PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | UniProt:Q9MA98 |
| InterPro:Restrct_endonuc-II-like | InterPro:RuvA_2-like | SUPFAM:SSF47781 | SUPFAM:SSF52980 | TIGRFAMs:TIGR00597 | UniParc:UPI00000A5DE8 |
| SEG:seg | : | : | : | : | : |
Description
ERCC1DNA excision repair protein ERCC-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9MA98]
Coordinates
chr3:+:1479339..1482042
Molecular Weight (calculated)
45750.7 Da
IEP (calculated)
7.203
GRAVY (calculated)
-0.621
Length
410 amino acids
Sequence
(BLAST)
(BLAST)
001: MANEDDDGEK SRSLHQQIAR KPKTQIVIGV PSYQEVLESS QTKSTPPSLF KPSQSFSQAF AFVKSSDVYS PPPPSSAAAS SSQPSGASQV PHSSSQTHQT
101: DGASSSSTPV ATGSVPSNTT QNRNAILVSH RQKGNPLLKH IRNVKWVFSD IIPDYVLGQN SCALYLSLRY HLLHPDYLYF RIRELQKNFK LSVVLCHVDV
201: EDTVKPLLEV TKTALLHDCT LLCAWSMTEC ARYLETIKVY ENKPADLIQG QMDTDYLSRL NHSLTSIRHV NKSDVVTLGS TFGSLAHIID ASMEDLARCP
301: GIGERKVKRL YDTFHEPFKR ATSSYPSVVE PPIPEAPVEK DVNSEEPVEE DEDFVEDSRK RKKKEPEPEK TVKTALSAVF ARYSDRLSKK KEKQKEKDTT
401: TASDAETHQN
101: DGASSSSTPV ATGSVPSNTT QNRNAILVSH RQKGNPLLKH IRNVKWVFSD IIPDYVLGQN SCALYLSLRY HLLHPDYLYF RIRELQKNFK LSVVLCHVDV
201: EDTVKPLLEV TKTALLHDCT LLCAWSMTEC ARYLETIKVY ENKPADLIQG QMDTDYLSRL NHSLTSIRHV NKSDVVTLGS TFGSLAHIID ASMEDLARCP
301: GIGERKVKRL YDTFHEPFKR ATSSYPSVVE PPIPEAPVEK DVNSEEPVEE DEDFVEDSRK RKKKEPEPEK TVKTALSAVF ARYSDRLSKK KEKQKEKDTT
401: TASDAETHQN
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.