Factsheet for PGSC0003DMT400063395

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g115580.2.1	Tomato	nucleus	93.62	94.1
KRG92823	Soybean	endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, plastid, vacuole	45.41	68.46
VIT_14s0128g00150.t01	Wine grape	nucleus	65.31	64.32
KRH33973	Soybean	nucleus	62.5	61.56
CDY27786	Canola	nucleus	60.2	58.85
Bra039453.1-P	Field mustard	nucleus	59.69	58.79
TraesCS1A01G182000.1	Wheat	nucleus	57.65	58.25
Os10t0518900-01	Rice	nucleus	57.4	58.14
TraesCS1B01G199000.1	Wheat	nucleus	57.65	58.1
TraesCS1D01G185100.1	Wheat	nucleus	57.4	57.99
CDY05146	Canola	nucleus	58.42	57.83
HORVU1Hr1G048250.1	Barley	nucleus	57.4	57.69
EER91361	Sorghum	nucleus	58.16	57.43
AT3G05210.1	Thale cress	nucleus	59.18	56.59
GSMUA_Achr11P...	Banana	nucleus	58.42	56.54
Zm00001d032439_P002	Maize	nucleus	56.38	55.67

Protein Annotations

Gene3D:1.10.150.20	EntrezGene:102603702	MapMan:14.6.4.2	Gene3D:3.40.50.10130	InterPro:ERCC1/RAD10/SWI10	GO:GO:0000724
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003684	GO:GO:0003824	GO:GO:0004518
GO:GO:0004519	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006259	GO:GO:0006281	GO:GO:0006294	GO:GO:0006950	GO:GO:0008150
GO:GO:0008152	GO:GO:0009628	GO:GO:0009987	GO:GO:0010213	GO:GO:0010224	GO:GO:0010332
GO:GO:0016043	GO:GO:0016787	GO:GO:0017108	GO:GO:0090305	UniProt:M1CAL8	PFAM:PD013585
PFAM:PF03834	PFAM:PF14520	EnsemblPlantsGene:PGSC0003DMG400024658	PGSC:PGSC0003DMG400024658	EnsemblPlants:PGSC0003DMT400063395	InterPro:Restrct_endonuc-II-like
InterPro:RuvA_2-like	SUPFAM:SSF47781	SUPFAM:SSF52980	TIGRFAMs:TIGR00597	UniParc:UPI00029497CF	RefSeq:XP_006345166.1
SEG:seg	:	:	:	:	:

Description

Excision repair cross-complementing 1 ercc1 [Source:PGSC_GENE;Acc:PGSC0003DMG400024658]

Coordinates

chr3:-:55420373..55424372

Molecular Weight (calculated)

43843.4 Da

IEP (calculated)

7.498

GRAVY (calculated)

-0.671

Length

392 amino acids

Sequence
(BLAST)

001: MGDAEREGGE KKKSFVIQIP SYEEVMESSS QSKTTSSSSS LFNPTPSFSQ AFKFVKNSEF YSPPPPPNTQ PSSSSQSATP RPVNSSDVNT SSSSTPSSSA
101: NRNAILVSNR QKGNPLLKHI RNVRWTFADI VCDYLLGPNT CALYLSLRYH LLHPDYLYFR IRELQKNFRL RIILCHVDVE DVIKPLLEVT RTSLLHDCTL
201: LCGWSLEECG RYLETVKVYE NKPADLIQGQ MDGDYLSRLN HALTSIRHVN KTDVVTLGST FGSLSHVMDA SMEDLARCPG IGERKVKRLY DAFHEPFKRE
301: VPKRQCIPET SVANESHPGS SNTKEDEKEI VDTSNSEKKE PEVTVKSALS AAFAKYSHKI TRKKNKSQEE EEGKCSTNEE AKTGDTNGSN NC

Best Arabidopsis Sequence Match ( AT3G05210.1 )
(BLAST)

001: MANEDDDGEK SRSLHQQIAR KPKTQIVIGV PSYQEVLESS QTKSTPPSLF KPSQSFSQAF AFVKSSDVYS PPPPSSAAAS SSQPSGASQV PHSSSQTHQT
101: DGASSSSTPV ATGSVPSNTT QNRNAILVSH RQKGNPLLKH IRNVKWVFSD IIPDYVLGQN SCALYLSLRY HLLHPDYLYF RIRELQKNFK LSVVLCHVDV
201: EDTVKPLLEV TKTALLHDCT LLCAWSMTEC ARYLETIKVY ENKPADLIQG QMDTDYLSRL NHSLTSIRHV NKSDVVTLGS TFGSLAHIID ASMEDLARCP
301: GIGERKVKRL YDTFHEPFKR ATSSYPSVVE PPIPEAPVEK DVNSEEPVEE DEDFVEDSRK RKKKEPEPEK TVKTALSAVF ARYSDRLSKK KEKQKEKDTT
401: TASDAETHQN

Arabidopsis Description

ERCC1DNA excision repair protein ERCC-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9MA98]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.