Factsheet for Bra033010.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plasma membrane
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plasma membrane
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000872.1-P
Bra004169.1-P
Bra006453.1-P
Bra011328.1-P
Bra013840.1-P
Bra018539.1-P
Bra019205.1-P
Bra019708.1-P
Bra036256.1-P
Bra039453.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G27420.1	Bra004169.1-P	AT1G66470.1	21798944
AT3G27420.1	Bra019708.1-P	AT1G66470.1	21798944
AT3G27420.1	Bra039453.1-P	AT3G05210.1	21798944
AT3G27420.1	Bra000872.1-P	AT4G02590.1	21798944
AT3G27420.1	Bra018539.1-P	AT4G02590.1	21798944
AT3G27420.1	Bra036256.1-P	AT4G02590.1	21798944
AT3G27420.1	Bra006453.1-P	AT4G24840.1	21798944
AT3G27420.1	Bra013840.1-P	AT4G24840.1	21798944
AT3G27420.1	Bra019205.1-P	AT4G24840.1	21798944
AT3G27420.1	Bra011328.1-P	AT4G32190.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY34147	Canola	cytosol	91.67	84.62
AT3G27420.1	Thale cress	nucleus	26.42	53.28
HORVU3Hr1G092230.1	Barley	cytosol	5.49	33.75
GSMUA_Achr6P22990_001	Banana	cytosol	8.13	30.3
KRG94362	Soybean	extracellular	15.85	24.3
VIT_14s0066g00150.t01	Wine grape	nucleus	17.89	23.98
KRH07095	Soybean	nucleus	14.84	22.88
Solyc02g067900.2.1	Tomato	cytosol	15.04	22.56
PGSC0003DMT400017933	Potato	cytosol	14.43	21.32
TraesCS3D01G408700.2	Wheat	nucleus	11.79	20.71
TraesCS3A01G414200.1	Wheat	nucleus	10.77	20.23
TraesCS3B01G449000.1	Wheat	cytosol	11.18	18.52
KXG33957	Sorghum	nucleus	9.96	18.01

Protein Annotations

EnsemblPlants:Bra033010.1	EnsemblPlants:Bra033010.1-P	EnsemblPlantsGene:Bra033010	Gene3D:1.20.1270.220	InterPro:IPR027353	InterPro:IPR038336
InterPro:NET_dom	InterPro:NET_sf	ncoils:Coil	PFAM:PF17035	PFscan:PS51525	SEG:seg
UniParc:UPI00025455DD	UniProt:M4EW27	MapMan:35.2	:	:	:

Description

AT3G27420 (E=2e-035) | unknown protein

Coordinates

chrA02:-:21935901..21939449

Molecular Weight (calculated)

51438.5 Da

IEP (calculated)

4.157

GRAVY (calculated)

-0.180

Length

492 amino acids

Sequence
(BLAST)

001: MKKNHAAAMR TDPEIEISSD EALPVGAEAS GPSLVGPSSG DDDGDMSGVG DGGEDADGES DELVGPSDEL VGPSDELVGP SDELVGPSDE LVGPPVLESG
101: LGAGVLADED FGAFVGAPPP EDGEALGVAE EFFLVVVGAE AVGGEVGAEA VDFGDAAAGC LGDPAVVGFG DPAAGCLGDA AADCLGDAAA AGGVGELLLA
201: LALGAPAGVG GSAAKTAVMA KTATARDRSV MVLVIFICEC EIFLNARQSL RIPRSVPIKA MPKRGAEAPP SSETQRVKPA DSFGDYRSQV SQLLSQEEKI
301: SLRNQEATMS HSNTAIGAGM SHLKREDLNV LLRQCVRDLT PEVNEMHLRA CSMKRFSDKA TKCDVPADSE DDVTNLLSNP DIVKKLTSRY SNVLLHELDD
401: MQQQLENILD DVVATCRPMS RGEKLDLRKA IMELPGGNRD RIAGIVEEHC RTSGKEFSDE VIANLDQSED NTMLWRLHFY VGAVKNAQKL AR

Best Arabidopsis Sequence Match ( AT3G27420.1 )
(BLAST)

001: MPKRTAEACP SSEIQRSRGD TFGSYRSQVA ELLSLGERIS HHDQQEANER HSESVIGAGM SNVEKDNLNV LLRQCVRNLS PEVDEMQECV RSLYLISQLG
101: NKCQSSSPSD FVPEETGGAR EDDIQLLLRS DSDMVKNITS QYSNVLLSKL DNMQQELERL LDDVVATCRP MTRGEIRELQ KSIKELPERN LNRVAEIVGN
201: HCIASGRDFN DKVIVNLDQA DKVMLWRLHF YVGAVKRPRS SLPS

Arabidopsis Description

Bromodomain testis-specific protein [Source:UniProtKB/TrEMBL;Acc:Q8VY55]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.