Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra033010.1-P | Field mustard | cytosol | 84.62 | 91.67 |
| CDY03968 | Canola | nucleus | 39.4 | 88.98 |
| AT3G27420.1 | Thale cress | nucleus | 25.14 | 54.92 |
| CDY42568 | Canola | plastid | 22.14 | 44.19 |
| CDY36364 | Canola | mitochondrion | 21.39 | 41.3 |
| HORVU3Hr1G092230.1 | Barley | cytosol | 5.07 | 33.75 |
| GSMUA_Achr6P22990_001 | Banana | cytosol | 7.69 | 31.06 |
| KRG94362 | Soybean | extracellular | 15.01 | 24.92 |
| VIT_14s0066g00150.t01 | Wine grape | nucleus | 16.89 | 24.52 |
| KRH07095 | Soybean | nucleus | 14.07 | 23.51 |
| Solyc02g067900.2.1 | Tomato | cytosol | 14.07 | 22.87 |
| PGSC0003DMT400017933 | Potato | cytosol | 13.51 | 21.62 |
| TraesCS3D01G408700.2 | Wheat | nucleus | 10.69 | 20.36 |
| TraesCS3A01G414200.1 | Wheat | nucleus | 9.76 | 19.85 |
| TraesCS3B01G449000.1 | Wheat | cytosol | 10.13 | 18.18 |
| KXG33957 | Sorghum | nucleus | 9.01 | 17.65 |
Protein Annotations
| EnsemblPlants:CDY34147 | EnsemblPlantsGene:GSBRNA2T00056121001 | Gene3D:1.20.1270.220 | InterPro:IPR027353 | InterPro:IPR038336 | InterPro:NET_dom |
| InterPro:NET_sf | ncoils:Coil | PFAM:PF17035 | PFscan:PS51525 | ProteinID:CDY34147 | ProteinID:CDY34147.1 |
| SEG:seg | UniParc:UPI0004EECA7E | UniProt:A0A078H953 | MapMan:35.2 | : | : |
Description
BnaA02g28930DBnaA02g28930D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H953]
Coordinates
chrLK032330:-:13838..17594
Molecular Weight (calculated)
56151.2 Da
IEP (calculated)
4.139
GRAVY (calculated)
-0.121
Length
533 amino acids
Sequence
(BLAST)
(BLAST)
001: MKKNHAAAMR TDPEIEISSD EALPVGAEAS GPSLVGPSSG DDDGDMSGVG DGGEDADGES DELLVGPSDE LVGPSDELVG PSDELVGPSD ELVGPPVLES
101: GLGAGVLADE DFGAFVGAPP PEDGEALGVA EEFFLVVVGA EAVGGEVGAE AVDFGDAAAG CLGDPAVVGF GDPAAGCLGD AAAGCLGDAA AAGGVGELLL
201: ALALGAPAGV GGSAAKTAVM AKTVTARDRS VMVLVIFICE CEIFLNAELV LENFIGFIFC LVKERTCGDG NFHFQKTIER TRVLCPTDNR FEFLVQCLPK
301: AMPKRGAEAP PSSETQRVKP ADSFGDYRSQ VAQLLSQEEK ISLRDQEATM SHSNTAIGAG MSHLKREDLN VLLRQCVRDL TPEVNEMHLR ACSMKRFSDK
401: AAKCDVPADS EDDVTNLLSN PDIVKKLTSR YSNVLLHELD DMQQQLENIL DDVVATCRPM SRGEKLDLQK AIMELPGGNR DRVAGIVEEH CRTSGKEFSD
501: EVIANLDQSE DNTMLWRLHF YVGAVKNAQK LAR
101: GLGAGVLADE DFGAFVGAPP PEDGEALGVA EEFFLVVVGA EAVGGEVGAE AVDFGDAAAG CLGDPAVVGF GDPAAGCLGD AAAGCLGDAA AAGGVGELLL
201: ALALGAPAGV GGSAAKTAVM AKTVTARDRS VMVLVIFICE CEIFLNAELV LENFIGFIFC LVKERTCGDG NFHFQKTIER TRVLCPTDNR FEFLVQCLPK
301: AMPKRGAEAP PSSETQRVKP ADSFGDYRSQ VAQLLSQEEK ISLRDQEATM SHSNTAIGAG MSHLKREDLN VLLRQCVRDL TPEVNEMHLR ACSMKRFSDK
401: AAKCDVPADS EDDVTNLLSN PDIVKKLTSR YSNVLLHELD DMQQQLENIL DDVVATCRPM SRGEKLDLQK AIMELPGGNR DRVAGIVEEH CRTSGKEFSD
501: EVIANLDQSE DNTMLWRLHF YVGAVKNAQK LAR
001: MPKRTAEACP SSEIQRSRGD TFGSYRSQVA ELLSLGERIS HHDQQEANER HSESVIGAGM SNVEKDNLNV LLRQCVRNLS PEVDEMQECV RSLYLISQLG
101: NKCQSSSPSD FVPEETGGAR EDDIQLLLRS DSDMVKNITS QYSNVLLSKL DNMQQELERL LDDVVATCRP MTRGEIRELQ KSIKELPERN LNRVAEIVGN
201: HCIASGRDFN DKVIVNLDQA DKVMLWRLHF YVGAVKRPRS SLPS
101: NKCQSSSPSD FVPEETGGAR EDDIQLLLRS DSDMVKNITS QYSNVLLSKL DNMQQELERL LDDVVATCRP MTRGEIRELQ KSIKELPERN LNRVAEIVGN
201: HCIASGRDFN DKVIVNLDQA DKVMLWRLHF YVGAVKRPRS SLPS
Arabidopsis Description
Bromodomain testis-specific protein [Source:UniProtKB/TrEMBL;Acc:Q8VY55]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.