Factsheet for PGSC0003DMT400017933

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400010993
PGSC0003DMT400023896
PGSC0003DMT400049768
PGSC0003DMT400063395
PGSC0003DMT400067640
PGSC0003DMT400069203
PGSC0003DMT400078776

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G27420.1	PGSC0003DMT400078776	AT1G66470.1	21798944
AT3G27420.1	PGSC0003DMT400023896	AT1G71230.1	21798944
AT3G27420.1	PGSC0003DMT400069203	AT1G71230.1	21798944
AT3G27420.1	PGSC0003DMT400063395	AT3G05210.1	21798944
AT3G27420.1	PGSC0003DMT400049768	AT4G02590.1	21798944
AT3G27420.1	PGSC0003DMT400067640	AT4G24840.1	21798944
AT3G27420.1	PGSC0003DMT400010993	AT4G32190.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g067900.2.1	Tomato	cytosol	93.09	94.51
KRG94362	Soybean	extracellular	38.74	40.19
KRH07095	Soybean	nucleus	38.44	40.13
VIT_14s0066g00150.t01	Wine grape	nucleus	43.84	39.78
GSMUA_Achr6P22990_001	Banana	cytosol	13.81	34.85
AT3G27420.1	Thale cress	nucleus	23.12	31.56
CDY03968	Canola	nucleus	22.22	31.36
HORVU3Hr1G092230.1	Barley	cytosol	7.51	31.25
CDY42568	Canola	plastid	22.52	28.09
CDY36364	Canola	mitochondrion	22.52	27.17
TraesCS3D01G408700.2	Wheat	nucleus	22.22	26.43
TraesCS3A01G414200.1	Wheat	nucleus	18.32	23.28
AT5G40600.1	Thale cress	endoplasmic reticulum	22.52	23.08
TraesCS3B01G449000.1	Wheat	cytosol	19.82	22.22
KXG33957	Sorghum	nucleus	16.52	20.22
Bra033010.1-P	Field mustard	cytosol	21.32	14.43
CDY34147	Canola	cytosol	21.62	13.51

Protein Annotations

EnsemblPlants:PGSC0003DMT400017933	EnsemblPlantsGene:PGSC0003DMG400006964	EntrezGene:102594365	Gene3D:1.20.1270.220	InterPro:IPR027353	InterPro:IPR038336
InterPro:NET_dom	InterPro:NET_sf	PANTHER:PTHR22880	PANTHER:PTHR22880:SF180	PFAM:PF17035	PFscan:PS51525
PGSC:PGSC0003DMG400006964	RefSeq:XP_006357166.1	UniParc:UPI00029485EA	UniProt:M1A9R6	MapMan:35.2	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400006964]

Coordinates

chr2:-:26590110..26594968

Molecular Weight (calculated)

37746.6 Da

IEP (calculated)

4.705

GRAVY (calculated)

-0.552

Length

333 amino acids

Sequence
(BLAST)

001: MGRVASTECN RQGPDYFGLF ASEMAELISQ DEDFLPISDQ IFEKTGKVNG AVEEKNSSMN NYITKEFRYT GGSASLFSDC FGSHVSNFGK ERLKLLLRQS
101: IVALSQEVDE ILDPVFSICQ LRSCLRYKES LLAVPGAVSD SDQGNRPQKK LKASPLSESK REDLNISPSR GDTTNDVKKH DGEQVKESLA KKDQNELGSI
201: AEATPEDGDV HNDLQFLLQN DSAKVESLIE KHCDELVSTL GYMEEKLEEL LDIVMSNCRL MTFPEKQHLR QLIRDLPPKN LDRVVQIFCR GKQVERHSCS
301: EVYVDLENED KATLWRLYFY IETVENAKRL CEV

Best Arabidopsis Sequence Match ( AT5G40600.2 )
(BLAST)

001: MSKRAAEEMT PSLESNRTGP DFFGYYRAQV EELLSQEEKI PHHNHVDAKK SSAEIIGAEL SDVKQEKLNA LLRQCVLNSI PEVDEMQSRV DSMYLMSQLS
101: NKKRSTLPTN AESVIPEDPR CKEVEDDLRL LMKSDPSLVK EIVGKHSSDL LARLNERQQH LEKLLDNVVT TCRPMSRGEK RDLQKSIKEL PAKNLERVAG
201: IIKNHYVALG KEMPDDVFVI NMEEEDKVLL WRLHYFVVAV QSARKLAS

Arabidopsis Description

unknown protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G27420.1); Has 18 /.../st hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). [Source:TAIR;Acc:AT5G40600]
SUBAcon: [mitochondrion,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.