Factsheet for PGSC0003DMT400067640

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 2
plastid 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400002155
PGSC0003DMT400004938
PGSC0003DMT400019294
PGSC0003DMT400040750
PGSC0003DMT400044708
PGSC0003DMT400049768
PGSC0003DMT400060963
PGSC0003DMT400063083
PGSC0003DMT400067640
PGSC0003DMT400069825
PGSC0003DMT400078262

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G24840.1	PGSC0003DMT400004938	AT1G31780.1	21798944
AT4G24840.1	PGSC0003DMT400069825	AT1G54770.1	21798944
AT4G24840.1	PGSC0003DMT400078262	AT2G30260.1	21798944
AT4G24840.1	PGSC0003DMT400060963	AT2G42260.1	21798944
AT4G24840.1	PGSC0003DMT400044708	AT2G42870.1	21798944
AT4G24840.1	PGSC0003DMT400002155	AT3G25710.1	21798944
AT4G24840.1	PGSC0003DMT400019294	AT3G25710.1	21798944
AT4G24840.1	PGSC0003DMT400049768	AT4G02590.1	21798944
AT4G24840.1	PGSC0003DMT400067640	AT4G24840.1	21798944
AT4G24840.1	PGSC0003DMT400040750	AT5G49210.1	21798944
AT4G24840.1	PGSC0003DMT400063083	AT5G61010.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g006660.1.1	Tomato	plastid	97.71	97.71
VIT_17s0000g01560.t01	Wine grape	cytosol	69.14	68.31
KRH03947	Soybean	cytosol	68.19	67.02
KRH57220	Soybean	cytosol	67.25	66.09
CDX92658	Canola	plastid	65.23	63.94
AT4G24840.1	Thale cress	cytosol, plastid	64.96	63.76
CDY11039	Canola	cytosol	64.56	63.28
CDY03412	Canola	plastid	64.69	63.16
CDY34317	Canola	cytosol, plastid	64.02	62.66
Bra013840.1-P	Field mustard	mitochondrion	55.26	62.6
GSMUA_AchrUn_...	Banana	cytosol	61.99	61.33
CDX70811	Canola	plastid	59.57	60.97
CDY51233	Canola	cytosol, plastid	59.43	60.91
Bra006453.1-P	Field mustard	cytosol, plastid	59.3	60.77
Zm00001d012851_P001	Maize	cytosol	59.3	59.54
HORVU5Hr1G121540.1	Barley	cytosol	58.76	59.0
OQU90613	Sorghum	cytosol	59.3	58.82
Os03t0849600-01	Rice	cytosol	59.7	58.75
TraesCS5B01G549700.1	Wheat	cytosol	60.11	58.38
TraesCS4A01G335400.1	Wheat	cytosol	60.24	58.28
TraesCS5D01G536700.1	Wheat	cytosol	59.97	58.25
Bra019205.1-P	Field mustard	cytosol	65.23	56.81
Zm00001d034842_P001	Maize	cytosol	59.16	55.22

Protein Annotations

EntrezGene:102588931	MapMan:22.6.2.2	InterPro:COG2	InterPro:COG_complex_COG2_C	InterPro:COG_su2_N	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005773	GO:GO:0006810	GO:GO:0007030
GO:GO:0008150	GO:GO:0009987	GO:GO:0015031	GO:GO:0016020	GO:GO:0016043	UniProt:M1CHL6
PFAM:PF06148	PFAM:PF12022	EnsemblPlantsGene:PGSC0003DMG400026304	PGSC:PGSC0003DMG400026304	EnsemblPlants:PGSC0003DMT400067640	PANTHER:PTHR12961
UniParc:UPI0002969E5C	RefSeq:XP_006357074.1	SEG:seg	:	:	:

Description

Conserved oligomeric Golgi complex component [Source:PGSC_GENE;Acc:PGSC0003DMG400026304]

Coordinates

chr8:-:1933842..1936438

Molecular Weight (calculated)

82875.0 Da

IEP (calculated)

5.479

GRAVY (calculated)

-0.215

Length

742 amino acids

Sequence
(BLAST)

001: MQDLQSPPPP SPQSTHAPPR SATDLFGDPT DPNPPQWLNP TLFQSQDFDP ESYISDLRTF VPLETLRSEL RSHFTSLQRD LVDLINRDYA DFVSLSTKLT
101: DVDASVVRMR APLFEIREKI DGFRNAVEGS LAALQNRLKQ RADAGEAREV LELLLDTFHV VSKVEKLIKE LPSGQTDYVE SGSNLRETQS MLLERIASEM
201: NRLKFYISHA QNMPFIENME KRIQNASSLL DTSLGHCLVD GLEYRDANAI YNCLRAYAAI DNTKNAEETF RSTIVGPLIQ KVIPQNPSGV VGGSSGHELE
301: EDYVKIKQYI EDDCKFLLDI SSIENSGLHV SSFLANSILK EVHSAIQKGK PVVFSPGRPT VFLKNYKASL DFLAHLEGYC PSRSEVVKFR SEAAYIEFMK
401: QWNVGVYFSL RFQEIAGALD SALSVAGLVP VASDQRKPQE LILKQSIALL ECLRSCWRDD VLVLSCSDRF LRLSLQLMSR FSSWLSAGLA ARKAGNVGSN
501: PGFEWAISAV PDDLVYVVHD LNRLGEDVCG DYLEHILELL KSCPAEVCDF VKQSILQGGK SLKGLLPIVM SAIIETIVEK SVEDLRQLKG ITATYRMTNK
601: PLPVRHSPYV SGVLRPLKEF LEGERAATCL TNETRNELLQ GAALEITHRY NDLTSELVNM SRRTESSLQK LRLGAQRRAG ASSDVSDHNL SETDKICMQL
701: FLDIQEYARS LSLLGVDAAS IPPYQSLWQC VAPAERKNTI SF

Best Arabidopsis Sequence Match ( AT4G24840.1 )
(BLAST)

001: MSDLVATSPS PSSAPRSATD FFSDPYDSHP LWFKPSLFLS PNFDSESYIS ELRTFVPFDT LRSELRSHLA SLNRELVDLI NRDYADFVNL STKLVDIDAA
101: VVRMRAPLLE LREKITGFRG SVEAALFALR NGLQQRSDAA AAREVLELLL DTFHVVSKVE KLIKVLPSTP SDWQNEDANS MGRSSMNDEN STQQDGTTMR
201: ETQSMLLERI ASEMNRLKFY MAHAQNLPFI ENMEKRIQSA SVLLDASLGH CFIDGLNNSD TSVLYNCLRA YAAIDNTNAA EEIFRTTIVA PFIQKIITHE
301: TTTNAAGTSE DELENDYKQI KHFIAKDCKM LLEISSTDKS GLHVFDFLAN SILKEVLWAI QKVKPGAFSP GRPTEFLKNY KASLDFLAYL EGYCPSRSAV
401: TKFRAEAICV EFMKQWNVGV YFSLRFQEIA GALDSALTSP SLVFIQDSDK ESSLNLILRQ SDTLLECLRS CWKEDVLVFS AADKFLRLTL QLLSRYSFWV
501: SSALNNRKSN ASPSPGCEWA VSATAEDFVY VIHDVNCLVS EVCGDYLGHI SQYLSSSSTE VLDVVRISIE QGGVSLEKVL PLLTKTIIDV IVDKSVEDLR
601: QLRGITATFR MTNKPLPVRH SPYVVGLLRP VKAFLEGDKA RNYLTQKTKE ELLHGSVSEI TRRYYELAAD VVSVARKTQS SLQKLRQNAQ RRGGAASGVS
701: DQNVSETDKM CMQLFLDIQE YGRNVSALGL KPADIPEYCS FWQCVAPADR QNSISV

Arabidopsis Description

FUNCTIONS IN: molecular_function unknown; INVOLVED IN: protein transport, Golgi organization; LOCATED IN: vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: COG complex component, COG2 (InterP /.../009316); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). [Source:TAIR;Acc:AT4G24840]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.