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Potato
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Potato
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 3
  • cytosol 2
  • mitochondrion 1
  • plastid 2
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:nucleus
MultiLoc:cytosol
Plant-mPloc:mitochondrion, nucleus
PProwler:plastid
TargetP:plastid
WoLF PSORT:cytosol
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
PGSC0003DMT400010344
PGSC0003DMT400020534
PGSC0003DMT400048857
PGSC0003DMT400073760
PGSC0003DMT400077344

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT2G42870.1 PGSC0003DMT400077344 AT3G22440.1 21798944
AT2G42870.1 PGSC0003DMT400010344 AT3G50330.1 21798944
AT2G42870.1 PGSC0003DMT400048857 AT3G50330.1 21798944
AT2G42870.1 PGSC0003DMT400073760 AT4G00120.1 21798944
AT2G42870.1 PGSC0003DMT400020534 AT5G67110.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Solyc07g056360.1.1 Tomato nucleus 76.15 79.81
Bra014551.1-P Field mustard plastid 45.87 43.1
CDX89007 Canola plastid 45.87 43.1
CDY00592 Canola plastid 45.87 43.1
AT2G42870.1 Thale cress plastid 45.87 42.37
Bra000276.1-P Field mustard plastid 44.95 42.24
Bra016854.1-P Field mustard plastid 44.95 42.24
CDY14860 Canola plastid 44.95 42.24
CDX83516 Canola plastid 44.95 42.24
CDY42818 Canola plastid 44.95 41.88
AT3G58850.1 Thale cress plastid 44.95 41.53
Bra007422.1-P Field mustard plastid 44.04 41.38
CDY49257 Canola plastid 44.04 41.38
Bra004712.1-P Field mustard plastid 44.04 41.38
CDX71918 Canola plastid 40.37 40.74
CDY50830 Canola plastid 43.12 40.52
CDY68147 Canola plastid 43.12 40.52
KRH73670 Soybean plastid 42.2 35.66
KRH14475 Soybean nucleus 44.04 34.53
VIT_12s0142g00160.t01 Wine grape mitochondrion 39.45 28.48
Protein Annotations
EnsemblPlants:PGSC0003DMT400044708EnsemblPlantsGene:PGSC0003DMG400017344EntrezGene:102599596GO:GO:0003674GO:GO:0005488GO:GO:0005515
GO:GO:0046983ncoils:CoilPANTHER:PTHR33124PANTHER:PTHR33124:SF3PGSC:PGSC0003DMG400017344RefSeq:XP_006348949.1
SEG:segUniParc:UPI000296F3B5UniProt:M1BGJ8MapMan:15.5.32::
Description
Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400017344]
Coordinates
chr7:-:51094720..51095430
Molecular Weight (calculated)
12298.7 Da
IEP (calculated)
6.676
GRAVY (calculated)
-0.636
Length
109 amino acids
Sequence
(BLAST)
001: MESSCEESSA IVATFSRKDK RMTQNVSKRQ KRRRESGYIV NNNNNEEEEV EEKILALQKI VPGGETLGVD MLFEETAGYI LQLQCQVKAL KVLASFVEGN
101: DKQRMKLGG
Best Arabidopsis Sequence Match ( AT2G42870.1 )
(BLAST)
001: MEETLATPDA TRRSLSPSCS ATVKSRAAGF ERRTKRRLSE TNASVREDRE EAEEEEDEVK EKIEALQRII PGGAALGVDA LFEETAGYIL SLQCQIKTIK
101: VLTSFLQRID QEDMKFGG
Arabidopsis Description
PAR1Transcription factor PAR1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SJH0]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.