Factsheet for PGSC0003DMT400077344

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400008944
PGSC0003DMT400018802
PGSC0003DMT400035478
PGSC0003DMT400039190
PGSC0003DMT400053214
PGSC0003DMT400071153
PGSC0003DMT400076768
PGSC0003DMT400077344

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G22440.1	PGSC0003DMT400035478	AT1G20880.1	21798944
AT3G22440.1	PGSC0003DMT400008944	AT1G33470.1	21798944
AT3G22440.1	PGSC0003DMT400039190	AT2G04400.1	15714319
AT3G22440.1	PGSC0003DMT400018802	AT4G02150.1	21798944
AT3G22440.1	PGSC0003DMT400076768	AT4G02150.1	21798944
AT3G22440.1	PGSC0003DMT400077344	AT4G14900.1	21798944
AT4G14900.1	PGSC0003DMT400053214	AT5G48385.1	21798944
AT4G14900.1	PGSC0003DMT400071153	AT5G48385.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g076050.2.1	Tomato	nucleus	97.47	97.47
VIT_05s0020g03470.t01	Wine grape	nucleus	75.88	74.71
KRG91301	Soybean	cytosol	71.4	70.04
KRH35520	Soybean	cytosol	71.98	69.81
AT3G22440.1	Thale cress	cytosol, nucleus, plastid	67.51	65.23
CDY46317	Canola	cytosol, nucleus, plastid	66.54	65.14
CDY34252	Canola	cytosol, nucleus, plastid	65.56	64.56
Bra023825.1-P	Field mustard	cytosol, nucleus, plastid	66.93	64.42
AT4G14900.1	Thale cress	nucleus	65.76	63.53
GSMUA_Achr2P12700_001	Banana	nucleus	52.92	55.62
GSMUA_Achr7P01520_001	Banana	nucleus	52.53	55.33
GSMUA_AchrUn_...	Banana	cytosol, nucleus	24.9	54.7
GSMUA_Achr4P28440_001	Banana	cytosol	30.54	51.14
CDY38318	Canola	nucleus	50.19	48.59
Os07t0173200-02	Rice	cytosol	45.33	43.63
Os03t0794900-01	Rice	nucleus	44.55	41.64
Zm00001d007835_P002	Maize	cytosol, endoplasmic reticulum, nucleus	45.33	40.31
Zm00001d018911_P001	Maize	cytosol	46.11	39.04
HORVU5Hr1G104870.1	Barley	cytosol	41.63	38.56
KXG34492	Sorghum	nucleus	46.3	38.51
TraesCS5A01G434500.1	Wheat	cytosol	41.44	38.45
TraesCS5D01G442300.1	Wheat	cytosol	41.25	38.41
TraesCS5B01G437500.2	Wheat	cytosol	41.25	38.2
PGSC0003DMT400047832	Potato	nucleus	29.96	28.95
PGSC0003DMT400053214	Potato	cytosol	29.77	28.02
HORVU3Hr1G033190.1	Barley	nucleus	5.64	27.36
PGSC0003DMT400071153	Potato	nucleus	28.79	27.16
PGSC0003DMT400065090	Potato	nucleus	26.65	22.53
PGSC0003DMT400037427	Potato	nucleus, plastid	16.93	15.73
PGSC0003DMT400084922	Potato	cytosol	10.51	13.64
PGSC0003DMT400080001	Potato	nucleus	18.48	13.27
PGSC0003DMT400080000	Potato	nucleus	18.87	12.88
PGSC0003DMT400094724	Potato	nucleus	19.46	12.82
PGSC0003DMT400036725	Potato	nucleus	4.28	8.09

Protein Annotations

EnsemblPlants:PGSC0003DMT400077344	EnsemblPlantsGene:PGSC0003DMG400030083	EntrezGene:102579372	GO:GO:0000003	GO:GO:0007275	GO:GO:0008150
GO:GO:0009791	GO:GO:0009908	GO:GO:0009987	GO:GO:0030154	InterPro:Frigida	PANTHER:PTHR31791
PANTHER:PTHR31791:SF2	PFAM:PF07899	PGSC:PGSC0003DMG400030083	RefSeq:XP_006360794.1	SEG:seg	UniParc:UPI00029487F5
UniProt:M1CY92	MapMan:35.1	:	:	:	:

Description

Protein FRIGIDA [Source:PGSC_GENE;Acc:PGSC0003DMG400030083]

Coordinates

chr9:+:53697972..53701672

Molecular Weight (calculated)

57379.7 Da

IEP (calculated)

6.876

GRAVY (calculated)

-0.474

Length

514 amino acids

Sequence
(BLAST)

001: MGSLADPGEL DSVEPPQQQP SFDEFQRQTS LMTSCTLLWK ELSDHFTSLE QDILKKSEAL KAKIQTLDSE TKASLEVLEQ RETSMNVSLS IALQKVVENK
101: KAAILAFDEG VEQPEVDDST GLLLKLKSFC VKMDSRSFWN FLTAKKKDLD SLRVEIPKAL GECVDPPRFV LESISEVFPE DKREERNERN NDLGWACVLM
201: LESLIPVMMD PVLGNERKLV TPSVKDKANE IAEIWKRSLD ERGGIENVKT PDVHTFLQHL VTFGVVKNED FDLYRKLVVG SAWRKQMPKL AISLGLGDKM
301: PEMIEELISR GQQVDAVHFT YEVGLAHKFP PVPLLKAFLK DAKKAAAAIL EDPNNFGRAA HFAAKKEQSA IRSVLKCIEE YKLEAEFPPD NLKKQLEQLE
401: KPKNEKKRPA AVPANKRTRA NNGGPMPPAK AGRSTNAYVS SFPVAPAFVR SPSHTQYPQA VPAYASPPAM YGSRSPPYPY SPEAAPYPGT PVNYSPYGGY
501: CNGMAPAYQQ AYYR

Best Arabidopsis Sequence Match ( AT3G22440.1 )
(BLAST)

001: MGSVPDPGEL TELAQPSFEE FQKQTSLMTS CTLLWQELSD HFTSLEQNLM KKSEALKQMI ETLDNQTQTS LESLKRREVT IDHSVEIVAG KVGERARAAL
101: ESLEKARDGC GDGSNDDSGD VDDEEGLLSA LKSLCLKMDA RGFWNFVTAR KKELENLRSK IPAALVDCVD PAMLVLEAIS EVFPVDTRGD KVSNDYGWAC
201: VVILESLTPV IVDPVIGKSR LLVTPSVKEK AKEIAETWKK SLEERGRIEN VKTPDVHTFL QHLVTFGIVK SEDLALYRKL VVGSAWRKQM PKLAVSVGLG
301: DQMPDMIEEL ISRGQQLDAV HFTYEVGLVD KFPPVPLLKA YLRDAKKSAA SIMEDSSNTG RATHLVARKE QSALKAVLKC IEEYKLEEEF PPENLKKRLD
401: QLEKTKTEKR KPAAVPANKR TRASYNGPMP PAKAGRITNA YVSSFPFIRS PSHSPQYASP AAYPSPPTTV YSNRSPPYPY SPEIIPGSYQ GSPIGYPAYN
501: GYCNGPVPAP APPVYHPHHH QHHQFHHQQH YY

Arabidopsis Description

FRL4AFRIGIDA-like protein 4a [Source:UniProtKB/Swiss-Prot;Acc:Q9LUV4]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.