Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 2
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G442300.1 | Wheat | cytosol | 96.76 | 97.28 |
| TraesCS5A01G434500.1 | Wheat | cytosol | 96.76 | 96.93 |
| HORVU5Hr1G104870.1 | Barley | cytosol | 94.77 | 94.77 |
| Os03t0794900-01 | Rice | nucleus | 75.5 | 76.18 |
| GSMUA_Achr2P12700_001 | Banana | nucleus | 49.37 | 56.03 |
| GSMUA_Achr7P01520_001 | Banana | nucleus | 49.19 | 55.94 |
| GSMUA_AchrUn_... | Banana | cytosol, nucleus | 23.06 | 54.7 |
| KRH35520 | Soybean | cytosol | 42.16 | 44.15 |
| KRG91301 | Soybean | cytosol | 41.62 | 44.08 |
| VIT_05s0020g03470.t01 | Wine grape | nucleus | 40.72 | 43.3 |
| CDY46317 | Canola | cytosol, nucleus, plastid | 39.46 | 41.71 |
| CDY34252 | Canola | cytosol, nucleus, plastid | 38.92 | 41.38 |
| PGSC0003DMT400077344 | Potato | nucleus | 38.2 | 41.25 |
| Solyc09g076050.2.1 | Tomato | nucleus | 38.2 | 41.25 |
| AT3G22440.1 | Thale cress | cytosol, nucleus, plastid | 39.28 | 40.98 |
| Bra023825.1-P | Field mustard | cytosol, nucleus, plastid | 39.1 | 40.64 |
| AT4G14900.1 | Thale cress | nucleus | 38.56 | 40.23 |
| CDY38318 | Canola | nucleus | 31.53 | 32.96 |
| TraesCS5B01G164900.2 | Wheat | cytosol | 25.41 | 25.45 |
| TraesCS1B01G432600.1 | Wheat | nucleus | 25.05 | 21.99 |
| TraesCS4B01G266000.1 | Wheat | cytosol, nucleus, plasma membrane | 19.28 | 21.49 |
| TraesCS3B01G136400.1 | Wheat | cytosol, nucleus, plastid | 24.14 | 20.36 |
| TraesCS5B01G543400.1 | Wheat | plastid | 13.33 | 14.2 |
Protein Annotations
| EnsemblPlants:TraesCS5B01G437500.2 | EnsemblPlantsGene:TraesCS5B01G437500 | InterPro:Frigida | ncoils:Coil | PANTHER:PTHR31791 | PANTHER:PTHR31791:SF11 |
| PFAM:PF07899 | SEG:seg | MapMan:35.1 | : | : | : |
Description
No Description!
Coordinates
chr5B:+:610689721..610692716
Molecular Weight (calculated)
59892.0 Da
IEP (calculated)
6.638
GRAVY (calculated)
-0.376
Length
555 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAAAAEEAA PAADAIRDGF AELERQQELL ASCTRLYQQL TEHFGSLERG IKSRSDSLRA RRRVVELRAS RRLDALRRRE LSIDASVKLA LSRLDALAKS
101: PAPKRDREDG DAPPSPPQPS SDDVAEGLAA LCAAMDPAGF LAFVVERRKE VDALRAELPA ALQRCVDPAR FAMDAVSEVF PVDRRAVRSP TDLAWACVLI
201: LEAVVPALAD PDPEIGAARP MVPQAARDRA RGMADEWKEA AERKGGVEGA KPPDAHAFLQ HVATFAVAEK EDKELYKRIV LSFSWRRQMP RLALTLGLED
301: DMEEIIEELI TKGQQLDAVN FAYEAGLLEK FSPVPLLKSY LEDSKKIYCI SDNVSTSSGQ SGVNANKKEQ SVLRAVIKCV EDHKLEAEFP LEDLRKRLEE
401: LEMAKTEKKK AASSCSSGGP ASKRIKGSAG GAMSPSKAGR PSDNTGAPSS PATATSSSST TAFIGSPASH VSYGTGSPYS YDRSAGHALY CGQSPLPMRE
501: PYAYPPAVPV PNVGLGMPYQ APPMTYPIYA GYNSGLGAYG NAMPPAPAFH QAYYR
101: PAPKRDREDG DAPPSPPQPS SDDVAEGLAA LCAAMDPAGF LAFVVERRKE VDALRAELPA ALQRCVDPAR FAMDAVSEVF PVDRRAVRSP TDLAWACVLI
201: LEAVVPALAD PDPEIGAARP MVPQAARDRA RGMADEWKEA AERKGGVEGA KPPDAHAFLQ HVATFAVAEK EDKELYKRIV LSFSWRRQMP RLALTLGLED
301: DMEEIIEELI TKGQQLDAVN FAYEAGLLEK FSPVPLLKSY LEDSKKIYCI SDNVSTSSGQ SGVNANKKEQ SVLRAVIKCV EDHKLEAEFP LEDLRKRLEE
401: LEMAKTEKKK AASSCSSGGP ASKRIKGSAG GAMSPSKAGR PSDNTGAPSS PATATSSSST TAFIGSPASH VSYGTGSPYS YDRSAGHALY CGQSPLPMRE
501: PYAYPPAVPV PNVGLGMPYQ APPMTYPIYA GYNSGLGAYG NAMPPAPAFH QAYYR
001: MGSVPDPGEL TELAQPSFEE FQKQTSLMTS CTLLWQELSD HFTSLEQNLM KKSEALKQMI ETLDNQTQTS LESLKRREVT IDHSVEIVAG KVGERARAAL
101: ESLEKARDGC GDGSNDDSGD VDDEEGLLSA LKSLCLKMDA RGFWNFVTAR KKELENLRSK IPAALVDCVD PAMLVLEAIS EVFPVDTRGD KVSNDYGWAC
201: VVILESLTPV IVDPVIGKSR LLVTPSVKEK AKEIAETWKK SLEERGRIEN VKTPDVHTFL QHLVTFGIVK SEDLALYRKL VVGSAWRKQM PKLAVSVGLG
301: DQMPDMIEEL ISRGQQLDAV HFTYEVGLVD KFPPVPLLKA YLRDAKKSAA SIMEDSSNTG RATHLVARKE QSALKAVLKC IEEYKLEEEF PPENLKKRLD
401: QLEKTKTEKR KPAAVPANKR TRASYNGPMP PAKAGRITNA YVSSFPFIRS PSHSPQYASP AAYPSPPTTV YSNRSPPYPY SPEIIPGSYQ GSPIGYPAYN
501: GYCNGPVPAP APPVYHPHHH QHHQFHHQQH YY
101: ESLEKARDGC GDGSNDDSGD VDDEEGLLSA LKSLCLKMDA RGFWNFVTAR KKELENLRSK IPAALVDCVD PAMLVLEAIS EVFPVDTRGD KVSNDYGWAC
201: VVILESLTPV IVDPVIGKSR LLVTPSVKEK AKEIAETWKK SLEERGRIEN VKTPDVHTFL QHLVTFGIVK SEDLALYRKL VVGSAWRKQM PKLAVSVGLG
301: DQMPDMIEEL ISRGQQLDAV HFTYEVGLVD KFPPVPLLKA YLRDAKKSAA SIMEDSSNTG RATHLVARKE QSALKAVLKC IEEYKLEEEF PPENLKKRLD
401: QLEKTKTEKR KPAAVPANKR TRASYNGPMP PAKAGRITNA YVSSFPFIRS PSHSPQYASP AAYPSPPTTV YSNRSPPYPY SPEIIPGSYQ GSPIGYPAYN
501: GYCNGPVPAP APPVYHPHHH QHHQFHHQQH YY
Arabidopsis Description
FRL4AFRIGIDA-like protein 4a [Source:UniProtKB/Swiss-Prot;Acc:Q9LUV4]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.