Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 8
PPI
Inferred distinct locusB in Crop
locusB | locations |
---|---|
TraesCS5A01G434500.1 | |
TraesCS5B01G437500.2 | |
TraesCS5D01G442300.1 |
Inferred from Arabidopsis experimental PPI
Ath locusA | locusB | Ath locusB | Paper |
---|---|---|---|
AT2G04400.1 | TraesCS5A01G434500.1 | AT3G22440.1 | 15714319 |
AT2G04400.1 | TraesCS5B01G437500.2 | AT3G22440.1 | 15714319 |
AT2G04400.1 | TraesCS5D01G442300.1 | AT3G22440.1 | 15714319 |
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
TraesCS5B01G166300.1 | Wheat | plastid | 98.67 | 98.67 |
TraesCS5A01G169500.1 | Wheat | plastid | 98.67 | 98.67 |
HORVU5Hr1G052150.3 | Barley | plastid | 97.61 | 97.61 |
Os09t0255400-02 | Rice | plastid | 78.25 | 76.62 |
Zm00001d020008_P001 | Maize | plastid | 70.56 | 68.38 |
OQU89210 | Sorghum | plastid | 71.35 | 66.75 |
TraesCS7D01G501700.1 | Wheat | plastid | 62.6 | 65.74 |
GSMUA_Achr3P12080_001 | Banana | plastid | 63.66 | 61.22 |
VIT_12s0057g01240.t01 | Wine grape | cytosol | 56.5 | 58.68 |
KRH14867 | Soybean | nucleus, plastid | 57.82 | 55.61 |
KRH73214 | Soybean | nucleus, plastid | 57.82 | 55.47 |
Bra037502.1-P | Field mustard | plastid | 55.17 | 54.45 |
AT5G48220.1 | Thale cress | plastid | 54.64 | 54.35 |
Solyc03g111850.2.1 | Tomato | plastid | 57.56 | 52.8 |
PGSC0003DMT400039190 | Potato | plastid | 57.29 | 52.55 |
TraesCS2D01G329500.1 | Wheat | plastid | 56.76 | 51.94 |
AT2G04400.1 | Thale cress | plastid | 53.32 | 50.0 |
Bra013209.1-P | Field mustard | plastid | 52.25 | 49.01 |
CDY15081 | Canola | plastid | 51.99 | 48.88 |
CDY66247 | Canola | plastid | 51.99 | 48.76 |
CDY00860 | Canola | cytosol | 11.41 | 45.26 |
CDX86321 | Canola | plastid | 54.64 | 41.28 |
CDX85318 | Canola | plastid | 54.11 | 39.23 |
CDY43301 | Canola | plastid | 28.91 | 37.46 |
TraesCS3D01G285000.1 | Wheat | cytosol | 23.87 | 37.04 |
CDX94822 | Canola | plastid | 15.12 | 32.76 |
CDY17450 | Canola | plastid | 28.65 | 29.19 |
Protein Annotations
KEGG:00400+4.1.1.48 | Gene3D:3.20.20.70 | MapMan:4.1.5.3.4 | InterPro:Aldolase_TIM | GO:GO:0003674 | GO:GO:0003824 |
GO:GO:0004425 | GO:GO:0006568 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | InterPro:IPR013785 |
InterPro:Indole-3-GlycerolPSynthase_CS | InterPro:Indole-3-glycerol_P_synth | HAMAP:MF_00134_B | PFAM:PF00218 | ScanProsite:PS00614 | PANTHER:PTHR22854 |
PANTHER:PTHR22854:SF14 | InterPro:RibuloseP-bd_barrel | SUPFAM:SSF51366 | EnsemblPlantsGene:TraesCS5D01G173900 | EnsemblPlants:TraesCS5D01G173900.1 | TIGR:cd00331 |
SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr5D:+:272354667..272357968
Molecular Weight (calculated)
41352.8 Da
IEP (calculated)
6.720
GRAVY (calculated)
-0.124
Length
377 amino acids
Sequence
(BLAST)
(BLAST)
001: MESLLAAAPF HVAAFSSVSS PSTHSPSLLR SIRGGGRAVR CAAAKEAILY ALEHDEMFNS EEVIQWESGK TINSIAAAQG IRIRRRCRPR YPSEGSGDDK
101: AVPRNILEQI VWDKEVEVSQ RKAKKPLKSV VESSEHAPPA RDFIGALTAA HRRNGVPALI AEVKKASPSR GVLRENFNPV EIAQAYEKNG AACLSILTDE
201: KHFQGSFENL ETVRNSGVQC PLLCKEFVID IWQIYYARSK GADAILLIAA VLPDLDMKYM LRICKNLGMT ALIEVHDEKE LDRVLRIDGV ELIGINNRSL
301: ETFVVDTSNT RMLMEKRGDI IKEKGIFVVG ESGLFTPDDV AYVHSAGVSA VLVGESLIKE EDPGRAIAGL FGKELLS
101: AVPRNILEQI VWDKEVEVSQ RKAKKPLKSV VESSEHAPPA RDFIGALTAA HRRNGVPALI AEVKKASPSR GVLRENFNPV EIAQAYEKNG AACLSILTDE
201: KHFQGSFENL ETVRNSGVQC PLLCKEFVID IWQIYYARSK GADAILLIAA VLPDLDMKYM LRICKNLGMT ALIEVHDEKE LDRVLRIDGV ELIGINNRSL
301: ETFVVDTSNT RMLMEKRGDI IKEKGIFVVG ESGLFTPDDV AYVHSAGVSA VLVGESLIKE EDPGRAIAGL FGKELLS
001: MYQNEVVESQ GIRIRRRPPT GPPLHYVGPF EFRLQNEGNT PRNILEEIVW HKDKEVAQMK ERKPLYSLKK ALDNVPPAKD FIGALRSAHQ RTGLPGLIAE
101: VKKASPSRGI LREDFNPVEI AQAYEKGGAA CLSVLTDDKY FKGSYENLQA IMEAGVKCPL LLKEFIVEAW QIYYGRSKGA DAVLLIASVL PDLDIKYMIK
201: ICKILGMATL VEVHDEREMD RVLAIEGVEL IGINNRNLET FEVDLGITKK LLEGERGELI RQKDILVVGE SGLFTPEDIA FVQEAGVKAV LVGESLIKQS
301: DPGKAISTLF GRDVSE
101: VKKASPSRGI LREDFNPVEI AQAYEKGGAA CLSVLTDDKY FKGSYENLQA IMEAGVKCPL LLKEFIVEAW QIYYGRSKGA DAVLLIASVL PDLDIKYMIK
201: ICKILGMATL VEVHDEREMD RVLAIEGVEL IGINNRNLET FEVDLGITKK LLEGERGELI RQKDILVVGE SGLFTPEDIA FVQEAGVKAV LVGESLIKQS
301: DPGKAISTLF GRDVSE
Arabidopsis Description
AT5g48220/MIF21_11 [Source:UniProtKB/TrEMBL;Acc:Q9LUB2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.