Factsheet for TraesCS5B01G166300.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS5A01G434500.1
TraesCS5B01G437500.2
TraesCS5D01G442300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G04400.1	TraesCS5A01G434500.1	AT3G22440.1	15714319
AT2G04400.1	TraesCS5B01G437500.2	AT3G22440.1	15714319
AT2G04400.1	TraesCS5D01G442300.1	AT3G22440.1	15714319

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G169500.1	Wheat	plastid	98.94	98.94
TraesCS5D01G173900.1	Wheat	plastid	98.67	98.67
HORVU5Hr1G052150.3	Barley	plastid	97.88	97.88
Os09t0255400-02	Rice	plastid	78.25	76.62
Zm00001d020008_P001	Maize	plastid	70.29	68.12
TraesCS7B01G423900.1	Wheat	plastid	66.84	66.67
OQU89210	Sorghum	plastid	70.82	66.25
GSMUA_Achr3P12080_001	Banana	plastid	63.4	60.97
VIT_12s0057g01240.t01	Wine grape	cytosol	56.23	58.4
KRH14867	Soybean	nucleus, plastid	57.56	55.36
KRH73214	Soybean	nucleus, plastid	57.56	55.22
Bra037502.1-P	Field mustard	plastid	55.44	54.71
AT5G48220.1	Thale cress	plastid	54.64	54.35
Solyc03g111850.2.1	Tomato	plastid	57.29	52.55
PGSC0003DMT400039190	Potato	plastid	57.03	52.31
TraesCS2B01G348500.1	Wheat	plastid	56.23	51.83
AT2G04400.1	Thale cress	plastid	53.05	49.75
Bra013209.1-P	Field mustard	plastid	51.99	48.76
CDY15081	Canola	plastid	51.72	48.63
CDY66247	Canola	plastid	51.72	48.51
CDY00860	Canola	cytosol	11.14	44.21
CDX86321	Canola	plastid	54.38	41.08
CDX85318	Canola	plastid	53.85	39.04
CDY43301	Canola	plastid	28.65	37.11
CDX94822	Canola	plastid	15.12	32.76
CDY17450	Canola	plastid	28.38	28.92

Protein Annotations

KEGG:00400+4.1.1.48	Gene3D:3.20.20.70	MapMan:4.1.5.3.4	InterPro:Aldolase_TIM	GO:GO:0003674	GO:GO:0003824
GO:GO:0004425	GO:GO:0006568	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	InterPro:IPR013785
InterPro:Indole-3-GlycerolPSynthase_CS	InterPro:Indole-3-glycerol_P_synth	HAMAP:MF_00134_B	PFAM:PF00218	ScanProsite:PS00614	PANTHER:PTHR22854
PANTHER:PTHR22854:SF14	InterPro:RibuloseP-bd_barrel	SUPFAM:SSF51366	EnsemblPlantsGene:TraesCS5B01G166300	EnsemblPlants:TraesCS5B01G166300.1	TIGR:cd00331
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr5B:+:308549990..308552478

Molecular Weight (calculated)

41262.7 Da

IEP (calculated)

6.720

GRAVY (calculated)

-0.106

Length

377 amino acids

Sequence
(BLAST)

001: MESLLAAAPF HVAAFSSLSS PSAHSPSVLR SIRGGGRAVR CAAAKEAILY ALEHDEMFNS EEVIQWESGK TINSIAAAQG IRIRRRCRPR YPSEGSGDDK
101: AVPRNILEQI VWDKEVEVSQ RKAKKALKSV VESSEHAPPA RDFIGALTAA HRRNGVPALI AEVKKASPSR GVLRENFNPV EIAQAYEKNG AACLSILTDE
201: KHFQGSFENL ETVRNSGVQC PLLCKEFVID IWQIYYARSK GADAILLIAA VLPDLDMKYM LRICKNLGMT ALIEVHDEKE LDRVLRIDGV ELIGINNRSL
301: ETFVVDTSNT RMLMEKRGDI IKEKGILVVG ESGLFTPDDV AYVHSAGVSA VLVGESLIKE EDPGRAIAGL FGKELLS

Best Arabidopsis Sequence Match ( AT2G04400.1 )
(BLAST)

001: MEGLVPVQRL PIKVASPSLY RCNNSVSIRR SISGFAMDRK INFRAPSQFS IRAQQSDLKE SLAVSSSSVE DKGNVLRIKE WEVEMYQEEL AISQGIRIRR
101: KPPSKAPLGY SGPFELRLHN NDADSPRNIL EEITWYKDVE VSRMKELNPL DVLKKAVEDA PPTRDFVGAL RMAHKRTGFP GLIAEVKKAS PSRGILKENF
201: DPVEIAQAYE KGGAACLSVL TDQKYFQGGF ENLEAIRSAG VKCPLLCKEF VVDPWQIYYA RTKGADAVLL IAAVLADLEI TFLLKICKKL SLAALVEVHD
301: EREMGRVLGI EGIELVGINN RSLETFEVDI SNTKKLLEGE HGRQIRERDM IVVGESGLFT PDDIAYVQAA GVKAVLVGES IVKQNDPEKG IAGLFGRNIS
401: HT

Arabidopsis Description

IGPSIndole-3-glycerol phosphate synthase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P49572]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.