CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY34252
CDY38318
CDY46317

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G04400.1	CDY34252	AT3G22440.1	15714319
AT2G04400.1	CDY38318	AT3G22440.1	15714319
AT2G04400.1	CDY46317	AT3G22440.1	15714319

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY15081	Canola	plastid	51.72	22.44
AT2G04400.1	Thale cress	plastid	51.72	22.39
CDY66247	Canola	plastid	51.72	22.39
CDY43301	Canola	plastid	36.78	21.99
VIT_12s0057g01240.t01	Wine grape	cytosol	42.53	20.39
KRH73214	Soybean	nucleus, plastid	44.83	19.85
KRH14867	Soybean	nucleus, plastid	44.25	19.64
TraesCS7A01G512300.1	Wheat	cytosol	36.78	19.45
HORVU7Hr1G114660.3	Barley	mitochondrion	36.21	17.85
Solyc03g111850.2.1	Tomato	plastid	40.23	17.03
PGSC0003DMT400039190	Potato	plastid	40.23	17.03
Zm00001d025652_P005	Maize	mitochondrion, plastid	40.8	17.03
GSMUA_Achr3P04280_001	Banana	plastid	38.51	16.83
EES12321	Sorghum	plastid	40.8	16.82
TraesCS7B01G423900.1	Wheat	plastid	36.21	16.67
Zm00001d024393_P001	Maize	plastid	35.06	15.93
TraesCS2B01G348500.1	Wheat	plastid	37.36	15.89
HORVU2Hr1G081460.2	Barley	plastid	37.36	15.82
TraesCS2D01G329500.1	Wheat	plastid	37.36	15.78
TraesCS2A01G335200.1	Wheat	plastid	37.36	15.74
EES14765	Sorghum	plastid	34.48	15.71
EES05044	Sorghum	plastid	33.91	15.53
HORVU5Hr1G052150.3	Barley	plastid	33.33	15.38
GSMUA_Achr3P12080_001	Banana	plastid	34.48	15.31
TraesCS5D01G173900.1	Wheat	plastid	32.76	15.12
TraesCS5B01G166300.1	Wheat	plastid	32.76	15.12
TraesCS5A01G169500.1	Wheat	plastid	32.76	15.12
Zm00001d020008_P001	Maize	plastid	33.33	14.91
OQU89210	Sorghum	plastid	34.48	14.89
CDY17450	Canola	plastid	31.61	14.86
Os08t0320400-01	Rice	plastid	18.97	14.29
TraesCS7D01G501700.1	Wheat	plastid	28.16	13.65
CDX86321	Canola	plastid	39.08	13.63
CDX85318	Canola	plastid	39.08	13.08
CDY00860	Canola	cytosol	6.9	12.63
Os09t0255400-02	Rice	plastid	27.59	12.47
TraesCS3D01G285000.1	Wheat	cytosol	12.07	8.64
CDY00859	Canola	mitochondrion	4.02	6.36

Protein Annotations

KEGG:00400+4.1.1.48	Gene3D:3.20.20.70	MapMan:4.1.5.3.4	GO:A0A078E117	InterPro:Aldolase_TIM	EnsemblPlants:CDX94822
ProteinID:CDX94822	ProteinID:CDX94822.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004425	GO:GO:0008150
GO:GO:0008152	EnsemblPlantsGene:GSBRNA2T00158319001	InterPro:IPR013785	InterPro:Indole-3-glycerol_P_synth	PFAM:PF00218	PANTHER:PTHR22854
PANTHER:PTHR22854:SF10	InterPro:RibuloseP-bd_barrel	SUPFAM:SSF51366	UniPathway:UPA00035	UniParc:UPI0004EEA6A4	SEG:seg

Description

BnaC03g43660D

Coordinates

chrLK031885:+:299247..300606

Molecular Weight (calculated)

19354.5 Da

IEP (calculated)

8.620

GRAVY (calculated)

0.187

Length

174 amino acids

Sequence
(BLAST)

001: MEGLFSVQSA GQRLISPSLY QCIGSVSIRR SVSGFSMDTR ISSRSPSQFT IRSQQVKIAQ AYERGGTAFL SVLTDQKYFK RGFENLEAIR SASMKVFSLS
101: KLSFLLLLFL NDEDNFFIAY CCYIDCLEIT FLLKFSNKLG LAALVEVLVG ESIVKQNDPE KGIAGLFGMN ISHT

Best Arabidopsis Sequence Match ( AT2G04400.1 )
(BLAST)

001: MEGLVPVQRL PIKVASPSLY RCNNSVSIRR SISGFAMDRK INFRAPSQFS IRAQQSDLKE SLAVSSSSVE DKGNVLRIKE WEVEMYQEEL AISQGIRIRR
101: KPPSKAPLGY SGPFELRLHN NDADSPRNIL EEITWYKDVE VSRMKELNPL DVLKKAVEDA PPTRDFVGAL RMAHKRTGFP GLIAEVKKAS PSRGILKENF
201: DPVEIAQAYE KGGAACLSVL TDQKYFQGGF ENLEAIRSAG VKCPLLCKEF VVDPWQIYYA RTKGADAVLL IAAVLADLEI TFLLKICKKL SLAALVEVHD
301: EREMGRVLGI EGIELVGINN RSLETFEVDI SNTKKLLEGE HGRQIRERDM IVVGESGLFT PDDIAYVQAA GVKAVLVGES IVKQNDPEKG IAGLFGRNIS
401: HT

Arabidopsis Description

IGPSIndole-3-glycerol phosphate synthase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P49572]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.