Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 8
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra013209.1-P | Field mustard | plastid | 85.07 | 85.07 |
| CDY66247 | Canola | plastid | 85.07 | 85.07 |
| CDY15081 | Canola | plastid | 83.58 | 83.79 |
| VIT_12s0057g01240.t01 | Wine grape | cytosol | 64.43 | 71.35 |
| CDY43301 | Canola | plastid | 51.49 | 71.13 |
| KRH14867 | Soybean | nucleus, plastid | 64.43 | 66.07 |
| KRH73214 | Soybean | nucleus, plastid | 63.18 | 64.63 |
| TraesCS7A01G512300.1 | Wheat | cytosol | 52.24 | 63.83 |
| AT5G48220.1 | Thale cress | plastid | 59.7 | 63.32 |
| Solyc03g111850.2.1 | Tomato | plastid | 61.94 | 60.58 |
| GSMUA_Achr3P04280_001 | Banana | plastid | 59.45 | 60.05 |
| CDY00860 | Canola | cytosol | 14.18 | 60.0 |
| PGSC0003DMT400039190 | Potato | plastid | 60.7 | 59.37 |
| HORVU7Hr1G114660.3 | Barley | mitochondrion | 51.99 | 59.21 |
| TraesCS7B01G423900.1 | Wheat | plastid | 53.98 | 57.41 |
| Zm00001d025652_P005 | Maize | mitochondrion, plastid | 58.71 | 56.59 |
| GSMUA_Achr3P12080_001 | Banana | plastid | 54.48 | 55.87 |
| EES12321 | Sorghum | plastid | 58.46 | 55.69 |
| TraesCS7D01G501700.1 | Wheat | plastid | 49.5 | 55.43 |
| Zm00001d024393_P001 | Maize | plastid | 52.24 | 54.83 |
| EES05044 | Sorghum | plastid | 51.74 | 54.74 |
| HORVU2Hr1G081460.2 | Barley | plastid | 55.72 | 54.5 |
| EES14765 | Sorghum | plastid | 51.49 | 54.19 |
| TraesCS2B01G348500.1 | Wheat | plastid | 54.73 | 53.79 |
| HORVU5Hr1G052150.3 | Barley | plastid | 50.25 | 53.58 |
| TraesCS5A01G169500.1 | Wheat | plastid | 50.0 | 53.32 |
| TraesCS5D01G173900.1 | Wheat | plastid | 50.0 | 53.32 |
| TraesCS2D01G329500.1 | Wheat | plastid | 54.48 | 53.16 |
| TraesCS5B01G166300.1 | Wheat | plastid | 49.75 | 53.05 |
| CDY17450 | Canola | plastid | 48.76 | 52.97 |
| TraesCS2A01G335200.1 | Wheat | plastid | 54.23 | 52.78 |
| CDX94822 | Canola | plastid | 22.39 | 51.72 |
| Zm00001d020008_P001 | Maize | plastid | 49.5 | 51.16 |
| Os09t0255400-02 | Rice | plastid | 48.51 | 50.65 |
| OQU89210 | Sorghum | plastid | 49.25 | 49.13 |
| Os08t0320400-01 | Rice | plastid | 24.38 | 42.42 |
| TraesCS3D01G285000.1 | Wheat | cytosol | 22.89 | 37.86 |
Protein Annotations
| KEGG:00400+4.1.1.48 | Gene3D:3.20.20.70 | MapMan:4.1.5.3.4 | EntrezGene:814980 | ProteinID:AAD25838.1 | ProteinID:AEC05831.1 |
| EMBL:AK117503 | ArrayExpress:AT2G04400 | EnsemblPlantsGene:AT2G04400 | RefSeq:AT2G04400 | TAIR:AT2G04400 | RefSeq:AT2G04400-TAIR-G |
| EnsemblPlants:AT2G04400.1 | TAIR:AT2G04400.1 | EMBL:AY086973 | InterPro:Aldolase_TIM | Unigene:At.366 | EMBL:BT025969 |
| GO:GO:0000162 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004425 | GO:GO:0005488 | GO:GO:0005507 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005829 | GO:GO:0006568 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008652 | GO:GO:0009058 | GO:GO:0009073 | GO:GO:0009507 |
| GO:GO:0009536 | GO:GO:0009570 | GO:GO:0009987 | GO:GO:0016829 | GO:GO:0016831 | InterPro:IPR013785 |
| InterPro:Indole-3-GlycerolPSynthase_CS | InterPro:Indole-3-glycerol_P_synth | HAMAP:MF_00134_B | RefSeq:NP_178521.1 | UniProt:P49572 | PFAM:PF00218 |
| PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001016 |
| PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 |
| PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 | ScanProsite:PS00614 | PANTHER:PTHR22854 |
| PANTHER:PTHR22854:SF10 | InterPro:RibuloseP-bd_barrel | SUPFAM:SSF51366 | EMBL:U18770 | UniParc:UPI00000484EA | SEG:seg |
Description
IGPSIndole-3-glycerol phosphate synthase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P49572]
Coordinates
chr2:+:1531148..1533737
Molecular Weight (calculated)
44579.9 Da
IEP (calculated)
7.458
GRAVY (calculated)
-0.204
Length
402 amino acids
Sequence
(BLAST)
(BLAST)
001: MEGLVPVQRL PIKVASPSLY RCNNSVSIRR SISGFAMDRK INFRAPSQFS IRAQQSDLKE SLAVSSSSVE DKGNVLRIKE WEVEMYQEEL AISQGIRIRR
101: KPPSKAPLGY SGPFELRLHN NDADSPRNIL EEITWYKDVE VSRMKELNPL DVLKKAVEDA PPTRDFVGAL RMAHKRTGFP GLIAEVKKAS PSRGILKENF
201: DPVEIAQAYE KGGAACLSVL TDQKYFQGGF ENLEAIRSAG VKCPLLCKEF VVDPWQIYYA RTKGADAVLL IAAVLADLEI TFLLKICKKL SLAALVEVHD
301: EREMGRVLGI EGIELVGINN RSLETFEVDI SNTKKLLEGE HGRQIRERDM IVVGESGLFT PDDIAYVQAA GVKAVLVGES IVKQNDPEKG IAGLFGRNIS
401: HT
101: KPPSKAPLGY SGPFELRLHN NDADSPRNIL EEITWYKDVE VSRMKELNPL DVLKKAVEDA PPTRDFVGAL RMAHKRTGFP GLIAEVKKAS PSRGILKENF
201: DPVEIAQAYE KGGAACLSVL TDQKYFQGGF ENLEAIRSAG VKCPLLCKEF VVDPWQIYYA RTKGADAVLL IAAVLADLEI TFLLKICKKL SLAALVEVHD
301: EREMGRVLGI EGIELVGINN RSLETFEVDI SNTKKLLEGE HGRQIRERDM IVVGESGLFT PDDIAYVQAA GVKAVLVGES IVKQNDPEKG IAGLFGRNIS
401: HT
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.